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The sea louse Lepeophtheirus salmonis (Krøyer, 1837) (Copepoda: Caligidae) is an ectoparasite of salmonid fish. It has earlier been proposed that the free-swimming infectious copepodid stage of L. salmonis gather at river mouths to infect wild Atlantic salmon Salmo salar L. and sea trout S. trutta L. smolts during their seaward migration. This study used aquarium-based methods to investigate the survival, infective ability and behaviour of L. salmonis copepodids exposed to short periods of low salinity levels, such as those encountered at river mouths. Survival of free-swimming copepodids was found to be severely compromised at salinity levels below 29 parts per thousand (ppt). Attachment to an S. salar host did not aid copepodid survival during post-infection exposure to low salinity environment, and a reduction in salinity appears to reduce the ability of copepodids to remain attached to S. salar smolts. Pre-infection exposure of copepodids to reduced salinity levels reduced infection of S. salar. Infection levels at reduced salinity were lower than predicted from the free-swimming survival experiment, suggesting that low salinity compromises the copepodids' ability to sense or respond to the presence of a host. In salinity gradients, copepodids demonstrated avoidance of salinities below 27 ppt, by both altering their swimming behaviour and changing the orientation of passive sinking. Avoidance of low salinity levels may be due to their adverse effects on copepodid physiology, as suggested by the reduction in survival. Sinking rates were also faster in reduced salinity, suggesting that remaining in the water column would be more energetically demanding for the copepodids at reduced salinity. These results show that both survival and host infectivity of L. salmonis are severely compromised by short-term exposure to reduced salinity levels.

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Lepeophtheirus salmonis and Caligus elongatus are important parasites of wild and cultured salmonids in the Northern Hemisphere. These species, generically referred to as sea lice, are estimated to cost the Scottish aquaculture industry in excess of £25 million per annum. There is great interest in countries such as Ireland, Scotland, Norway and Canada to sample sea lice larvae in their natural environment in order to understand lice larvae distribution and improve parasite control. Microscopy is currently relied on for use in the routine identification of sea lice larvae in plankton samples. This method is, however, limited by its time-consuming nature and requirement for highly skilled personnel. The development of alternative methods for the detection of sea lice larvae which might be used to complement and support microscopic examinations of environmental samples is thus desirable. In this study, a genetic method utilising a real-time PCR Taqman ® -MGB probe-based assay targeting the mitochondrial cytochrome oxidase I (mtCOI) gene was developed, which allowed species-specific detection of L. salmonis and C. elongatus larvae from unsorted natural and spiked plankton samples. Real-time PCR is a rapid, sensitive, highly specific and potentially quantitative technique. This study demonstrated its suitability for the routine identification of L. salmonis and C. elongatus in mixed plankton samples. The real-time PCR assay developed has considerable potential for use in complementing, supporting and reducing reliance on time-consuming conventional microscopic examination for the specific identification of sea lice larvae in plankton samples.

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The role of parasitic sea lice (Siphonostomatoida; Caligidae), especially Lepeophtheirus salmonis, in the epidemiology of Infectious Salmon Anemia Virus (ISAv) has long been suspected. The epidemiological studies conducted during the 1998 major Infectious Salmon Anaemia (ISA) outbreak in Scotland demonstrated a strong correlation between sea lice presence and ISAv positive sites or subsequent clinical outbreaks of ISA. The question posed from this observation was “do sea lice infestations on Atlantic salmon make them more susceptible to viral infections?”This study investigated the role that sea lice infestations have on the severity of ISAv infections and disease mortality in experimental populations of farmed Atlantic salmon (Salmo salar). A series of experiments was carried out that investigated the potential of sea lice to modify the outcome of an ISAv infection. Experimental populations of Atlantic salmon were established that had: no lice and no ISAv, a single infection with either ISAv or lice and a co-infection with lice then ISAV. The results were quite clear, the process of infestation by the parasite prior to ISAv exposure significantly increased the mortality and death rates of Atlantic salmon, when compared to uninfected controls and ISAv infected groups only. This was consistent over two source strains of Atlantic salmon (Pennobscot and Saint John River), but the severity and timing was altered. Immunological responses were also consistent in that pro-inflammatory genes were induced in lice only and co-infected fish, whereas the anti-viral response, Mx, MH class I β, Galectin 9 and TRIM 16, 25 genes were down-regulated by lice infection prior to and shortly after co-infection with ISAv. It is concluded that the sea lice settlement on Atlantic salmon and the parasite’s subsequent manipulation of the host’s immune system, which increases parasite settlement success, also increased susceptibility to ISAv.