By following peroxiredoxin I (Prx I)-dependent NADPH oxidation spectrophotometrically, we observed that Prx I activity decreased gradually with time. The decay in activity was coincident with the conversion of Prx I to a more acidic species as assessed by two-dimensional gel electrophoresis. Mass spectral analysis and studies with Cys mutants determined that this shift in pI was due to selective oxidation of the catalytic site Peroxiredoxins are a family of peroxidases that reduce hydrogen peroxide and alkyl hydroperoxides to water and alcohol, respectively, with the use of reducing equivalents provided by thiol-containing proteins (1-3). The first peroxiredoxin (Prx) 1 proteins to be discovered were a 25-kDa yeast protein initially called thiol-specific antioxidant enzyme (4 -6), and a 21-kDa Salmonella typhimurium alkyl-hydroperoxide reductase termed AhpC (7-10). Subsequently, a mammalian homolog of thiol-specific antioxidant/AhpC was purified; and it, together with thiol-specific antioxidant and AhpC, defined a family of peroxidases that now includes six mammalian isoforms (Prx I-VI) and members identified in organisms from each kingdom (3, 10, 11).All Prx proteins contain a conserved Cys residue, which corresponds to Cys 51 in mammalian Prx I, in the N-terminal portion of the molecule (10, 11). The majority of Prx proteins, including four (Prx I-IV) of six mammalian peroxiredoxins, contain an additional conserved Cys residue in the C-terminal region that corresponds to Cys 172 in mammalian Prx I (2, 3, 12, 13). The Prx enzymes containing two conserved Cys residues are thus called 2-Cys Prx, in comparison with a small number of Prx proteins termed 1-Cys Prx, which contain only one conserved cysteine residue in the N-terminal domain (2, 10). In 2-Cys Prx enzymes, the N-terminal conserved cysteine is oxidized by H 2 O 2 to cysteine-sulfenic acid (Cys 51 -SOH), which then reacts with Cys 172 -SH of the other subunit to produce an intermolecular disulfide (1, 14). Reduction of the disulfide intermediate of Prx I-IV is specific in that it can be achieved by thioredoxin (Trx), but not by GSH or glutaredoxin (15, 16). Thus, the reducing equivalents for the peroxidase activity of Prx I-IV are ultimately derived from NADPH via thioredoxin reductase (TrxR) and Trx. Not all Prx enzymes containing both conserved Cys residues are reduced by Trx: the bacterial Prx AhpC is reduced by AhpF, which contains both Trx and TrxR domains (10, 17). In the absence of a physiological electron donor, the peroxidase activities of 2-Cys Prx enzymes can be supported by small thiol molecules such as dithiothreitol (DTT) and 2-mercaptoethanol, but not by GSH (1, 14, 15). In 1-Cys Prx enzymes, including mammalian Prx VI, the conserved cysteine is also the site of oxidation, but remains in a sulfenic acid state upon oxidation because there is no nearby partner cysteine to form a disulfide bond (18,19). Trx cannot reduce this sulfenic acid-containing intermediate (18,20). GSH has been proposed to be the electron donor, but these data remain co...