Background Cotton fiber yield is a complex trait, which can be influenced by multiple agronomic traits. Unravelling the genetic basis of cotton fiber yield-related traits contributes to genetic improvement of cotton. Results In this study, 503 upland cotton varieties covering the four breeding stages (BS1–BS4, 1911–2011) in China were used for association mapping and domestication analysis. One hundred and forty SSR markers significantly associated with ten fiber yield-related traits were identified, among which, 29 markers showed an increasing trend contribution to cotton yield-related traits from BS1 to BS4, and 26 markers showed decreased trend effect. Four favorable alleles of 9 major loci (R2 ≥ 3) were strongly selected during the breeding stages, and the candidate genes of the four strongly selected alleles were predicated according to the gene function annotation and tissue expression data. Conclusions The study not only uncovers the genetic basis of 10 cotton yield-related traits but also provides genetic evidence for cotton improvement during the cotton breeding process in China.
Fruit branch angle (FBA), a pivotal component of cotton plant architecture, is vital for field and mechanical harvesting. However, the molecular mechanism of FBA formation is poorly understood in cotton. To uncover the genetic basis for FBA formation in cotton, we performed a genome-wide association study (GWAS) of 163 cotton accessions with re-sequencing data. A total of 55 SNPs and 18 candidate genes were significantly associated with FBA trait. By combining GWAS and transcriptome analysis, four genes underlying FBA were identified. An FBA-associated candidate gene Ghi_A09G08736, which is homologous to SAUR46 in Arabidopsis thaliana, was detected in our study. In addition, transcriptomic evidence was provided to show that gravity and light were implicated in the FBA formation. This study provides new insights into the genetic architecture of FBA that informs architecture breeding in cotton.
Fresh-cut fruits are often more perishable and exhibit browning shortly after pulp is cut and exposed to natural atmosphere. In this study, fresh-cut peaches were treated with distilled water (control), 20 g L-1 soy protein isolate (SPI), 10 g L-1 calcium chloride (CaCl2) or 20 g L-1 soy protein isolate + 10 g L-1 calcium chloride (20 g L-1 SPI + 1.0 g L-1 CaCl2), respectively, and then stored at 0°C to assess the protective effects of these treatments on the qualities and the antioxidative system of fresh-cut peaches. The result showed that firmness, colour(∆E*) and soluble solid content (SSC) in fresh-cut peaches treated with 20 g L -1 SPI + 10 g L-1 CaCl2 were higher than control. Compared with other treatments, treatment with 20 g L-1 SPI + 10 g L-1 CaCl2 2 significantly decreased weight loss rate, bacterial growth, respiratory rate and ethylene emission of fresh-cut peaches. Treatment with 20 g L-1 SPI + 10 g L-1 CaCl2 also inhibited increase in browning degree, production of reactive oxygen species, malonaldehyde and total phenols, and maintained higher activities of superoxide dismutase and catalase, whereas inhibited the activities of peroxidase and polyphenol oxidase. These results suggest that treatment with 20 g L-1 SPI + 10 g L-1 CaCl2 enhanced antioxidant activities of fresh-cut peaches, inhibited browning, and was more effective in maintaining the quality of fresh cut peaches. Keywords: Edible coating; Ethylene emission; Phenolic contents; Respiration rate; Active oxygen species
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