The role of geographic isolation in marine microbial speciation is hotly debated because of the high dispersal potential and large population sizes of planktonic microorganisms and the apparent lack of strong dispersal barriers in the open sea. Here, we show that gene flow between distant populations of the globally distributed, bloom-forming diatom species Pseudo-nitzschia pungens (clade I) is limited and follows a strong isolation by distance pattern. Furthermore, phylogenetic analysis implies that under appropriate geographic and environmental circumstances, like the pronounced climatic changes in the Pleistocene, population structuring may lead to speciation and hence may play an important role in diversification of marine planktonic microorganisms. A better understanding of the factors that control population structuring is thus essential to reveal the role of allopatric speciation in marine microorganisms.allopatric speciation | dispersal | marine cosmopolitan planktonic microorganisms | population structure | microsatellites

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Clonal cultures of Pseudo-nitzschia pungens were isolated at various times from seven sites in the North Sea. During the mitotic cell cycle, the two plate-shaped chloroplasts were girdle-appressed during interphase and mitosis. After cytokinesis, the chloroplasts moved onto the parental valve and remained there during the formation of the new hypovalve and until separation and re-arrangement of the sibling cells within the cell chain had been completed. Clones were almost always heterothallic and cultures of opposite mating type isolated from different localities were compatible. Meiosis I was cytokinetic and accompanied by chloroplast division. Meiosis II involved karyokinesis but not cytokinesis and preceded the rearrangement and contraction of the two gametes. Sexual reproduction involved physiological anisogamy. With one exception, gamete behaviour was clone-specific, gametes being active in clones of one mating type but passive in clones of the other mating type. Auxospore development was accompanied by deposition of a transverse and then a longitudinal perizonium. Infrequently, triploid auxospores and presumably haploid auxospores were produced. The four chloroplasts of diploid auxospores did not divide, and behaved synchronously during the two acytokinetic mitotic cycles accompanying the deposition of the initial thecae. Just before the first division of the initial cell, the chloroplasts shifted onto the valves (two per valve). The division of the initial cell was not accompanied by chloroplast division and so the two daughter cells received two chloroplasts each. Two modes of abrupt cell size reduction were detected. One occurred during initial cell formation when part of the expanded auxospore aborted. The other pattern was more gradual and was observed in growing cultures; during successive cell divisions a frustule constriction appeared and intensified, one chloroplast split into two, and part of the protoplast aborted. A simple naming system is proposed for mating types in pennate diatoms.

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