Abstract. Emerging infectious diseases can present serious threats to wildlife, even to the point of causing extinction. Whitenose fungus (Pseudogymnoascus destructans) is causing an epizootic in bats that is expanding rapidly, both geographically and taxonomically. Little is known of the ecology and distributional potential of this intercontinental pathogen. We address this gap via ecological niche models that characterise coarse resolution niche differences between fungus populations on different continents, identifying areas potentially vulnerable to infection in South America. Here we explore a novel approach to identifying areas of potential distribution across novel geographic regions that avoids perilious extrapolation into novel environments. European and North American fungus populations show differential use of environmental space, but rather than niche differentiation, we find that changes are best attributed to climatic differences between the two continents. Suitable areas for spread of the pathogen were identified across southern South America; however caution should be taken to avoid underestimating the potential for spread of this pathogen in South America.

Distinct lineages of avian influenza viruses (AIVs) are harbored by spatially segregated birds, yet significant surveillance gaps exist around the globe. Virtually nothing is known from the Antarctic. Using virus culture, molecular analysis, full genome sequencing, and serology of samples from Adélie penguins in Antarctica, we confirmed infection by H11N2 subtype AIVs. Their genetic segments were distinct from all known contemporary influenza viruses, including South American AIVs, suggesting spatial separation from other lineages. Only in the matrix and polymerase acidic gene phylogenies did the Antarctic sequences form a sister relationship to South American AIVs, whereas distant phylogenetic relationships were evident in all other gene segments. Interestingly, their neuraminidase genes formed a distant relationship to all avian and human influenza lineages, and the polymerase basic 1 and polymerase acidic formed a sister relationship to the equine H3N8 influenza virus lineage that emerged during 1963 and whose avian origins were previously unknown. We also estimated that each gene segment had diverged for 49 to 80 years from its most closely related sequences, highlighting a significant gap in our AIV knowledge in the region. We also show that the receptor binding properties of the H11N2 viruses are predominantly avian and that they were unable to replicate efficiently in experimentally inoculated ferrets, suggesting their continuous evolution in avian hosts. These findings add substantially to our understanding of both the ecology and the intra- and intercontinental movement of Antarctic AIVs and highlight the potential risk of an incursion of highly pathogenic AIVs into this fragile environment.

No abstract

The situation of rabies in America is complex: rabies in dogs has decreased dramatically, but bats are increasingly recognized as natural reservoirs of other rabies variants. Here, bat species known to be rabies-positive with different antigenic variants, are summarized in relation to bat conservation status across Latin America. Rabies virus is widespread in Latin American bat species, 22.5%75 of bat species have been confirmed as rabies-positive. Most bat species found rabies positive are classified by the International Union for Conservation of Nature as “Least Concern”. According to diet type, insectivorous bats had the most species known as rabies reservoirs, while in proportion hematophagous bats were the most important. Research at coarse spatial scales must strive to understand rabies ecology; basic information on distribution and population dynamics of many Latin American and Caribbean bat species is needed; and detailed information on effects of landscape change in driving bat-borne rabies outbreaks remains unassessed. Finally, integrated approaches including public health, ecology, and conservation biology are needed to understand and prevent emergent diseases in bats.

In Chile, while dog rabies has decreased markedly over the last 30 years, bat rabies is still reported frequently. In order to shed new light on the spatiotemporal trends of these reports, we analysed active and passive data from years 1985 and 2012, which included 61 076 samples from 289 counties of Chile. We found that from 1994 to 2012, more than 15 000 bat samples were submitted for diagnostics through passive surveillance, 9·5% of which tested positive for rabies. By contrast, the prevalence of infection was only ~0·4% among the nearly 12 000 bat samples submitted through active surveillance. We found that the prevalence of dog rabies dropped steadily over the same period, with just a single confirmed case since 1998. None of the 928 samples from wild animals, other than bats, were positive for rabies. Although there has been only one confirmed case of human rabies in Chile since 1985, and a single confirmed case in a dog since 1998, bats remain a reservoir for rabies viruses. While active surveillance indicates that rabies prevalence is low in bat colonies, the high proportion of positive bats submitted through passive surveillance is a concern. To prevent human rabies, local public health agencies should increase research on the basic ecology of bats and the role of stray dogs and cats as potential rabies amplifiers.

The marine otter (Lutra felina) lives exclusively along exposed rocky shorelines on the South American Pacific coast from Peru (6°S), to Cape Horn, Chile (56°S), and Isla de los Estados, Argentina. L. felina diet and its relationship to prey availability and energy content was assessed by spraint and prey remains analysis, direct observation, and the use of crab pots and fish traps, at four sites on the Valdivian coast in the south of Chile, between June 1999 and June 2000. Based on spraints analysis, the diet was composed of 25 species; 52% (13/25) of the species identified were crustaceans, 40% (10/25) were fish, and 8% (2/25) were mollusks. Crustaceans were found in 78% of 475 spraints, 100% of 929 prey remains, and 90.8% of prey determined by direct observation, fish in 20% of spraints and 9.0% of prey determined by direct observation, and mollusks in 2% of spraints and 0.2% of prey determined by direct observation. Observed seasonal variation in prey availability was reflected in the otter diet. Fourteen prey species were trapped; 43% (6/14) were crustaceans and 57% (8/14) fish, crustaceans were 93% of 566 trapped individuals, fish 7%. L. felina showed opportunistic feeding behavior, selecting prey seasonally according to their availability rather than to their energy input.

The distribution of the Endangered southern roots had the highest IRR; most of the highly marked sprainting sites were found in this habitat. Canalized river otter Lontra provocax population in southern Chile has contracted, causing concern among otter specialists rivers and streams lacking these characteristics had the lowest IRR and hardly any highly marked sprainting sites. and conservationists. The main factor contributing to this decline is the loss of suitable habitat. Because the Chilean The data indicates that otters can tolerate some degree of riparian vegetation removal, provided there is minimum Irrigation Law promotes land drainage, the removal of riparian vegetation and canalization of lowland rivers in use of floodplains by humans. Temperate evergreen ombrophilus swamp forests and shallow watercourses several provinces, this situation could deteriorate further. Using an Index of Revisitation Rate (IRR), we assessed with woody debris or gravel, riparian vegetation and a plentiful supply of macrocrustaceans appear to be the the influence of woody debris, riparian vegetation, river bank morphology and river canalization on the use of preferred habitat and conditions for the otter and may be key to its survival in freshwater habitats. rivers and streams by the southern river otter. Surveys were conducted on foot, on a monthly basis, between April 1999 and March 2001 in the south of Chile. The Keywords Chile, Lontra provocax, macrocrustaceans, otter field signs, riparian vegetation, river canalization, surveys covered 13 sections of rivers and streams, 3 km long and <50 m wide. River and stream banks with high woody debris. density of riparian vegetation, woody debris and exposed disturbance and reduce the carrying capacity of their

The consequences of habitat fragmentation include reduced habitat availability, increased isolation and patch extinction. This study investigates the occupancy patterns of Lontra felina, a little known and endangered marine otter, on naturally discontinuous habitat and the relationship between otter occupancy and rocky seashore patches, patch size and isolation and human influences. Marine otter occupancy was determined through direct sightings and the presence/absence of spraints, and measured by logistic regression and general linear models. The study was conducted in Chile between 281S and 401S, and consisted of eight study sites. Within these sites, a total of 23 rocky seashore patches, 2.3-63.8 km long, were surveyed from January 2005 to March 2006. The strongest predictors of marine otter occurrence were rocky seashore patches larger than 5 km long and o6 km apart. These networks should be no farther than 20 km from contiguous (without sandy beaches) rocky seashore patches over 15 km long.