One hundred forty-seven isolates of Streptococcus pneumoniae with high-level penicillin resistance collected during a national surveillance program in the United States were characterized by serotyping, pulsed-field restriction analysis, ribotyping, and repetitive-sequence (BOX element) PCR. The results generated by each method were compared by frequency of association to examine whether relationships existed between the various typing methods and statistically to determine association with the geographic source of the isolate or the age of the patient from whom the isolate was obtained. When the data were examined by pairwise analysis of individual strain classifications produced by each typing method, no statistically significant relationships between strain type, geographic location, or patient age were identified, suggesting that distinct clones of penicillin-resistant S. pneumoniae have been widely distributed throughout the United States. However, we did observed shared expression of two or three typing markers at a high frequency (>50%) among clusters of strains, indicating a certain level of concordance between the various typing methods used to classify penicillinresistant S. pneumoniae.Thirty years ago, the recovery of penicillin-resistant Streptococcus pneumoniae (PRSP) strains from patients residing in the United States was considered an anomaly. Over the past decade, however, there has been a dramatic rise in the rate of isolation of PRSP. At present, it is estimated that nearly one-third of all clinical isolates of S. pneumoniae from the United States demonstrate intermediate or high levels of resistance to penicillin (3). In essence, the isolation of penicillin-susceptible phenotypes of pneumococci in this country is rapidly approaching the point at which it will be the exception rather than the rule.In a recent study, Doern and colleagues (4) found that 103 (70.1%) of 147 PRSP isolates with high-level resistance collected from 30 surveillance centers across the United States during 1994 and 1995 clustered within 9 of 38 possible pulsedfield gel electrophoresis (PFGE) types. Four of the PFGE types accounted for 76 (51.7%) of the 147 PRSP isolates, while only six serotypes were represented among the entire collection. Collectively, these results suggest that the majority of PRSP isolates in the United States are represented by a relatively limited number of clonal groups. However, that study found no relationship between PFGE type, patient age, and the geographic location of the isolate.During the course of the discussion, the authors raised a number of provocative questions regarding the molecular typing of PRSP, not the least of which emphasizes that the use of a single typing method to establish the genetic relatedness of PRSP strains is completely arbitrary. Indeed, a variety of genotypic and phenotypic markers have been employed in previous studies to examine the epidemiological relationship of pneumococcal isolates (1,4,5,8,12,14,15). Clearly, the discriminatory power of any typing method (th...