The objective of this study was to determine whether adding water to a dry diet would reduce sorting and improve cow performance. Eighteen multiparous lactating Holstein cows were used in a cross-over design with 21-d periods. Treatments had the same dietary composition and differed only by adding water (WET) or not (DRY). Diets consisted of 10% alfalfa silage, 30% hay (approximately 80% grass and 20% alfalfa), and 60% concentrate [dry matter (DM) basis]. Dietary DM was 80.8% for DRY and 64.4% for WET. Both diets contained 16.9% crude protein and 24.3% neutral detergent fiber. Particle size was determined using the Wisconsin Particle Size Separator on the as-fed diets. The separator has five square-hole screens (Y(1) to Y(5)) with diagonal openings of 26.9 mm for Y(1), 18 mm for Y(2), 8.98 mm for Y(3), 5.61 mm for Y(4), and 1.65 mm for Y(5), and one pan. Sorting was calculated on a 60 degrees C DM basis (60DM). Predicted intake of Y(i) was calculated as the product of 60DM intake (60DMI) and the 60DM fraction of Y(i) in the total mixed ration for that screen. For DRY and WET, actual 60DMI by screen expressed as a percentage of predicted intake was 61.4% vs. 75.2% for Y(1), 83.8% vs. 98.6% for Y(2), 85.6% vs. 90.8% for Y(3), 95.2% vs. 96.0% for Y(4), 100.1% vs. 101.9% for Y(5), and 105.9% vs. 102.9% for pan, respectively. Adding water did not affect total DM intake (28.3 kg/d) or milk production (41.3 kg/d). Neutral detergent fiber intake was 6.42 kg/d for WET and 6.15 kg/d for DRY. Milk fat percentage tended to be higher (3.41% vs. 3.31%) when cows consumed WET vs. DRY. No differences in ruminal pH, NH(3), and volatile fatty acids were observed. Cows sorted against long particles in favor of shorter particles on both diets. Adding water to dry diets reduced sorting and tended to increase neutral detergent fiber intake and milk fat percentage.

T lymphocytes are the principal actors of vertebrates’ cell-mediated immunity. Like B cells, they can recognize an unlimited number of foreign molecules through their antigen-specific heterodimer receptors (TRs), which consist of αβ or γδ chains. The diversity of the TRs is mainly due to the unique organization of the genes encoding the α, β, γ, and δ chains. For each chain, multi-gene families are arranged in a TR locus, and their expression is guaranteed by the somatic recombination process. A great plasticity of the gene organization within the TR loci exists among species. Marked structural differences affect the TR γ (TRG) locus. The recent sequencing of multiple whole genome provides an opportunity to examine the TR gene repertoire in a systematic and consistent fashion. In this review, we report the most recent findings on the genomic organization of TRG loci in mammalian species in order to show differences and similarities. The comparison revealed remarkable diversification of both the genomic organization and gene repertoire across species, but also unexpected evolutionary conservation, which highlights the important role of the T cells in the immune response.

BackgroundIn mammals, T cells develop along two discrete pathways characterized by expression of either the αβ or the γδ T cell receptors. Human and mouse display a low peripheral blood γδ T cell percentage ("γδ low species") while sheep, bovine and pig accounts for a high proportion of γδ T lymphocytes ("γδ high species"). While the T cell receptor alpha (TRA) and delta (TRD) genes and the genomic organization of the TRA/TRD locus has been determined in human and mouse, this information is still poorly known in artiodactyl species, such as sheep.ResultsThe analysis of the current Ovis aries whole genome assembly, Oar_v3.1, revealed that, as in the other mammalian species, the sheep TRD locus is nested within the TRA locus. In the most 5’ part the TRA/TRD locus contains TRAV genes which are intermingled with TRDV genes, then TRD genes which include seven TRDD, four TRDJ genes, one TRDC and a single TRDV gene with an inverted transcriptional orientation, and finally in the most 3’ part, the TRA locus is completed by 61 TRAJ genes and one TRAC gene.Comparative sequence and analysis and annotation led to the identification of 66 TRAV genes assigned to 34 TRAV subgroups and 25 TRDV genes belonging to the TRDV1 subgroup, while one gene was found for each TRDV2, TRDV3 and TRDV4 subgroups. Multiple duplication events within several TRAV subgroups have generated the sheep TRAV germline repertoire, which is substantially larger than the human one. A significant proportion of these TRAV gene duplications seems to have occurred simultaneously with the amplification of the TRDV1 subgroup genes. This dynamic of expansion has also generated novel multigene subgroups, which are species-specific. Ovis aries TRA and TRD genes identified in this study were assigned IMGT definitive or temporary names and were approved by the IMGT/WHO-IUIS nomenclature committee.The completeness of the genome assembly in the 3' part of the locus has allowed us to interpret rearranged CDR3 of cDNA from both TRA and TRD chain repertoires. The involvement of one up to four TRDD genes into a single transcript makes the potential sheep TRD chain much larger than any known TR chain repertoire.ConclusionsThe sheep genome, as the bovine genome, contains a large and diverse repertoire of TRA and TRD genes when compared to the “γδ T cell low” species genomes. The composition and length of the rearranged CDR3 in TRD V-delta domains influence the three-dimensional configuration of the antigen-combining site thus suggesting that in ruminants, γδ T cells play a more important and specific role in immune recognition.Electronic supplementary materialThe online version of this article (doi:10.1186/s12864-015-1790-z) contains supplementary material, which is available to authorized users.

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The present study identifies the genomic structure and the gene content of the T cell receptor beta (TRB) locus in the Oryctolagus cuniculus whole genome assembly. The rabbit locus spans less than 600 Kb and the general genomic organization is highly conserved with respect to other mammalian species. A pool of 74 TRB variable (TRBV) genes distributed in 24 subgroups are located upstream of two in tandem-aligned D-J-C gene clusters, each composed of one TRBD, six TRBJ genes, and one TRBC gene, followed by a single TRBV gene with an inverted transcriptional orientation. All TRB genes (functional, ORF, pseudogenes) of this paper have been approved by the IMGT/WHO-IUIS nomenclature committee. Additionally, five potentially functional protease serine (PRSS) trypsinogen or trypsinogen-like genes were identified: two in tandem PRSS-like genes, followed by two PRSS genes with unique traits, lie downstream of the TRBV1 gene and one PRSS gene is located about 400 Kb away downstream of the TRBV genes. Comparative and phylogenetic analyses revealed that multiple duplication events within a few subgroups have generated the germline repertoire of the rabbit TRBV genes, which is substantially larger than those described in humans, mice, and dogs, suggesting that a strong evolutionary pressure has selected the development of a species-specific TRBV repertoire. Hence, the genomic organization of the TRB locus in the genomes appears to be the result of a balance between the maintenance of a core-number of genes essential for the immunological performances and the requirement of newly arisen genes.