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High spatial resolution maps of land surface energy, water and CO2 fluxes, e.g. evapotranspiration (ET) and gross primary productivity (GPP), are important for agricultural monitoring, ecosystem and water resources management. However, it is not clear which is the optimal (e.g. coarsest possible) spatial resolution to capture those fluxes accurately. Unmanned Aerial Systems (UAS) can address this by collecting very high spatial resolution (<1 m, VHR) imagery. The objective of this study is to model ET and GPP dynamics using VHR optical and thermal imagery and quantify the influence of the spatial heterogeneity in the flux simulations and validations. The study was conducted at a deciduous willow bioenergy eddy covariance (EC) flux site in Denmark. Flight campaigns were conducted during the growing seasons of 2016 and 2017 with a hexacopter equipped with RGB, multispectral and thermal infrared cameras. A 'top-down' modeling approach consisting of the Priestley-Taylor Jet Propulsion Laboratory model and a light use efficiency model sharing the same canopy biophysical constraints was used to estimate ET and GPP. Model outputs were benchmarked by EC flux observations with the source weighted footprint. Our results indicate that our model can well estimate the instantaneous net radiation, ET, GPP, evaporative fraction, light use efficiency and water use efficiency with root-mean-square deviations (RMSD) of 31.6 W•m −2 , 41.2 W•m −2 , 3.12 μmol•C•m −2 •s −1 , 0.08, 0.16 g•C•MJ −1 and 0.35 g•C•kg −1 , respectively. Further, it is found that using a footprint model to sample different areas of VHR imagery can be a tool to provide better diurnal estimates to benchmark with EC data. Moreover, these VHR maps (0.3 m) allowed us to quantify metrics of spatial heterogeneity by using semivariogram analysis and by aggregating model inputs into different spatial resolutions. For instance, we find that in this site, the aggregation of simulated GPP using the source weighted mean of the EC footprint was about 30% lower in RMSD than using the arithmetic mean of the footprint. This demonstrates the accuracy of the modeled VHR spatial patterns.Nevertheless, we also find that imagery resolution consistent with the canopy size (around 1.5 m in our study) is sufficient to capture the spatial heterogeneity of the fluxes as transpiration and canopy assimilation of CO2 are processes regulated at the tree crown level. Our results highlight the importance of considering the land surface 3 heterogeneity for flux modeling and the source contribution within the EC footprint for model benchmarking at appropriate spatial resolutions.

Abstract. High-quality bathymetric maps of inland water bodies are a common requirement for hydraulic engineering and hydrological science applications. Remote sensing methods, e.g. space-borne and airborne multispectral or LIDAR, have been developed to estimate water depth, but are ineffective for most inland water bodies, because of water turbidity and attenuation of electromagnetic radiation in water. Surveys conducted with boats equipped with sonars can retrieve accurate water depths, but are expensive, time-consuming, and are unsuitable for non-navigable water bodies. 15We develop and assess a novel approach to retrieve accurate and high resolution bathymetry maps. We measured accurate water depths using a tethered floating sonar controlled by an Unmanned Aerial Vehicle (UAV) in a Danish lake and in a few river cross sections. The developed technique combines the advantages of remote sensing techniques with the potential of bathymetric sonars. UAV surveys can be conducted also in non-navigable, inaccessible, or remote water bodies. The tethered sonar can measure bathymetry with an accuracy of ca. 2.1% of the actual depth for 20 observations up to 35 m, without being significantly affected by water turbidity, bedform or bed material.

Abstract. High-quality bathymetric maps of inland water bodies are a common requirement for hydraulic engineering and hydrological science applications. Remote sensing methods, such as space-borne and airborne multispectral imaging or lidar, have been developed to estimate water depth, but are ineffective for most inland water bodies, because of the attenuation of electromagnetic radiation in water, especially under turbid conditions. Surveys conducted with boats equipped with sonars can retrieve accurate water depths, but are expensive, time-consuming, and unsuitable for unnavigable water bodies.We develop and assess a novel approach to retrieve accurate and high-resolution bathymetry maps. We measured accurate water depths using a tethered floating sonar controlled by an unmanned aerial vehicle (UAV) in a lake and in two different rivers located in Denmark. The developed technique combines the advantages of remote sensing with the potential of bathymetric sonars. UAV surveys can be conducted also in unnavigable, inaccessible, or remote water bodies. The tethered sonar can measure bathymetry with an accuracy of ∼ 2.1 % of the actual depth for observations up to 35 m, without being significantly affected by water turbidity, bed form, or bed material.