BackgroundWidespread but particularly incident in the tropics, leptospirosis is transmitted to humans directly or indirectly by virtually any Mammal species. However, rodents are recognized as the most important reservoir. In endemic regions, seasonal outbreaks are observed during hot rainy periods. In such regions, hot spots can be evidenced, where leptospirosis is “hyper-endemic”, its incidence reaching 500 annual cases per 100,000. A better knowledge of how rodent populations and their Leptospira prevalence respond to seasonal and meteorological fluctuations might help implement relevant control measures.Methodology/Principal FindingsIn two tribes in New Caledonia with hyper-endemic leptospirosis, rodent abundance and Leptospira prevalence was studied twice a year, in hot and cool seasons for two consecutive years. Highly contrasted meteorological situations, particularly rainfall intensities, were noted between the two hot seasons studied. Our results show that during a hot and rainy period, both the rodent populations and their Leptospira carriage were higher. This pattern was more salient in commensal rodents than in the sylvatic rats.Conclusions/SignificanceThe dynamics of rodents and their Leptospira carriage changed during the survey, probably under the influence of meteorology. Rodents were both more numerous and more frequently carrying (therefore disseminating) leptospires during a hot rainy period, also corresponding to a flooding period with higher risks of human exposure to waters and watered soils. The outbreaks of leptospirosis in hyper-endemic areas could arise from meteorological conditions leading to both an increased risk of exposure of humans and an increased volume of the rodent reservoir. Rodent control measures would therefore be most effective during cool and dry seasons, when rodent populations and leptospirosis incidence are low.

The geographic origin and migration of the brown rat (Rattus norvegicus) remain subjects of considerable debate. In this study, we sequenced whole genomes of 110 wild brown rats with a diverse world-wide representation. We reveal that brown rats migrated out of southern East Asia, rather than northern Asia as formerly suggested, into the Middle East and then to Europe and Africa, thousands of years ago. Comparison of genomes from different geographical populations reveals that many genes involved in the immune system experienced positive selection in the wild brown rat.

Background Hemotropic mycoplasmas, previously classified in the genus Eperythrozoon, have been reported as causing human infections in Brazil, China, Japan and Spain. Methods In 2017, we detected DNA from “Candidatus Mycoplasma haemohominis” in the blood of a Melanesian patient from New Caledonia presenting with febrile splenomegaly,weight loss, life-threatening autoimmune haemolytic anemia and hemophagocytosis. The full genome of the bacterium was sequenced from a blood isolate. Subsequently, we tested retrospectively (2011-2017) and prospectively (2018-2019) patients who had been hospitalized with a similar clinico-biological picture. In addition, as these patients had been in contact with frugivorous bats (authorized under conditions for hunting and eating in New Caledonia) we investigated the role of these animals and their biting flies by testing them for hemotropic mycoplasmas. Results Fifteen patients were found to be infected by this hemotropic mycoplasma. Among them, four (27%) died following splenectomy performed for spontaneous spleen rupture, or to cure refractory autoimmune haemolytic anemia. The bacterium was cultivated from the patient's blood. The full genome of the Neocaledonian “Candidatus M. haemohominis” strain differed from that of a recently identified Japanese strain. Forty-six percent of 40 tested Pteropus bats and 100% of collected bat flies Cyclopodia horsfieldi (Nycteribiidae, Diptera) were positive. Human,bat and dipteran strains were highly similar. Conclusions The bacterium being widely distributed in bats, “Candidatus M. haemohominis” should be regarded as a potential cause of severe infections in humans.

The giant edible Placostylus snails of New Caledonia occur across a wide range of environmental conditions, from the dry southwest to the wetter central and northeastern regions. In large, slow-moving animals such as Placostylus, speciation could be assumed to be largely driven by allopatry and genetic drift as opposed to natural selection. We examined variation in shell morphology using geometric morphometrics and genetic structure within two species of Placostylus (P. fibratus, P. porphyrostomus), to determine the drivers of diversity in this group. Despite the current patchy distribution of snails on New Caledonia, both mtDNA and nuclear SNP data sets (>3000 loci) showed weak admixing between populations and species. Shell morphology was concordant with the genetic clusters we identified and had a strong relationship with local environment. The genetic data, in contrast to the morphological data, did not show concordance with climatic conditions, suggesting the snails are not limited in their ability to adapt to different environments. In sympatry, P. fibratus and P. porphyrostomus maintained genetic and morphological differences, suggesting a genetic basis of phenotypic variation. Convergence of shell shape was observed in two adjacent populations that are genetically isolated but experience similar habitat and climatic conditions. Conversely, some populations in contrasting environments were morphologically distinct although genetically indistinguishable. We infer that morphological divergence in the Placostylus snails of New Caledonia is mediated by adaptation to the local environment.

Previous studies have mainly focused on bat mortality through collision by wind turbines, and very few studies have assessed the indirect impacts on bat activity and on foraging habitat availability. Also, there is a global lack of knowledge on the vulnerability of tropical bat fauna due to wind energy production, even though it is well known that windpower can affect bat communities and biodiversity hotspots are widespread in the tropics. We present one of the first studies to quantify the indirect impact of wind farms on insectivorous bats in tropical hotspots of biodiversity. Bat activity was compared between wind farm sites and control sites, via ultrasound recordings at stationary points. The activity of bent winged bats (Miniopterus sp) and wattled bats (Chalinolobus sp) were both significantly lower at wind turbine sites. The result of the study demonstrates a large effect on bat habitat use at wind turbines sites compared to control sites. Bat activity was 20 times higher at control sites compared to wind turbine sites, which suggests that habitat loss is an important impact to consider in wind farm planning We strongly recommend that the loss of the foraging habitat loss is considered in mitigation hierarchy (avoiding, reducing, offsetting) when compensating for negative impacts of wind farms.

1. Cats Felis catus, in all their forms (domestic, free-roaming/stray and feral), have been identified as a major global threat to biodiversity, especially birds and small mammals. However, there has been little previous consideration of the extent and impact of predation of bats by cats, or of whether specific characteristics make certain species of bats particularly vulnerable to predation by cats. 2. We reviewed the impact of cats on bats, based on a collation of scientific literature and the International Union for Conservation of Nature (IUCN) Red List database. Our aim was to produce a synthesis of the extent to which cats prey upon and threaten bats. We also collated available data on cat diet, which provide information on predation rates of bats by cats. 3. Few studies (n = 44) have identified bat species preyed upon or threatened by cats, with a disproportionate number of studies from islands. In these studies, 86 bat species (about 7% of the global extant tally) are reported as preyed upon or threatened by cats, and about one quarter of these species are listed as Near Threatened or threatened (IUCN categories Critically Mammal Review

Recently, debate has flourished about inadequacies in the simplistic ''worst invasive species'' approach and its global scale. Here we investigate the status of the red-vented bulbul (Pycnonotus cafer), an Asian passerine bird. This species has been introduced widely across Pacific islands and is commonly blamed for its impacts on agriculture and biodiversity via dispersal of invasive plant seeds and competition with native fauna. This case study evaluates all available data on the impacts and management of this invasive species and identifies priorities for future research. We reviewed the scientific literature and information from three databases (ABBA, GAVIA, eBird) and highlight that the attention paid to this species by scientists and managers varied considerably between islands and contexts and was globally lower than the attention paid to other species on the IUCN-ISSG list. The red-vented bulbul has now established on 37 islands and in seven continental locations outside its native range. We show that three categories of effects are associated with this species: plant damage, seed dispersal and disturbance of fauna. We compiled lists of 110 plant species consumed, 33 plant species dispersed, and 15 species of bird that this bulbul interacts with. However, these lists were mainly made of opportunistic observations rather than specific assessments. Research outputs that focus on better ways to prevent or quantify the impacts of the red-vented bulbul remain scarce. We found very few references exploring potential positive impacts of this species, and only two examples of management actions undertaken against it. The latter are required to inform management actions, especially on sensitive tropical islands where invasions and dispersal of the red-vented bulbul are ongoing. Our analysis of the literature found no clear support for considering this species to be one of the ''world's worst'' invasive alien species.

To cite this version:Quiterie Duron, Oriana Garcia-Iriarte, Fabrice Brescia, Eric Vidal. Comparative effects of native frugivores and introduced rodents on seed germination in New-Caledonian rainforest plants.Abstract Native frugivores play an important role in native plant community dynamics by participating in seed dispersal. Today many island forests are invaded by introduced omnivores, such as rats, but their role in dispersing native plants is still little known. Here, we evaluated whether native seeds from New-Caledonian rainforests can germinate after passing through an invasive rat digestive tract and compared seed germinability and germination time between seeds ingested by invasive rats and native frugivores. We offered native fruits of Ficus racemigera and Freycinetia sulcata to the rats Rattus rattus and R. exulans, three flying foxes Pteropus spp. and the pigeon Ducula goliath. Our results showed that seeds can germinate after passing through an invasive rat digestive tract, and suggest that rats can disperse seeds of both plant species. However, invasive rats may be less efficient than native frugivores, as more seeds were destroyed when passing through rat digestive tracts than through native frugivores, and because germinability was lower and germination time was longer for seeds passing through invasive rats than through native frugivores. The reduced efficiency of rats may result from their generalized diet, the structure of their digestive tract, and/or their feeding behavior. In New-Caledonian rainforests, dispersal services on both plant species are likely well fulfilled by flying foxes and Ducula pigeons, but rats do not seem to be as efficient dispersers. Consequently, management measures to protect native frugivores should help to conserve seed dispersal services.