The Pélagiques Gascogne (PELGAS) integrated survey has been developed by a multidisciplinary team of Ifremer and La Rochelle University scientists since 2000, joined by commercial fishermen in 2007. Its initial focus was to assess the biomass and predict the recruitment success of anchovy in the Bay of Biscay in spring. Taking advantage of the space and versatility of R/V Thalassa II, sampling has been progressively extended to other ecosystem components. PELGAS therefore further developed the second objective of monitoring and studying the dynamic and diverse Biscay pelagic ecosystem in springtime. The PELGAS survey model has allowed for the establishment of a long-term time-series of spatially-explicit data of the Bay of Biscay pelagic ecosystem since the year 2000. Main sampled components of the targeted ecosystem are: hydrology, phytoplankton, mesozooplankton, fish and megafauna. The survey now provides two main ecosystem products: standard raster maps of ecosystem parameters, and a time series dataset of indicators of the Bay of Biscay pelagic ecosystem state. They are used to inform fish stock and ecosystem-based management, and support ecosystem research. The present paper introduces the PELGAS survey, as a practical example of an integrated, vessel-based, ecosystem survey. The evolution of the PELGAS scientific team and sampling protocols are presented and analysed, to outline factors crucial to the success of the survey. Data and results derived from PELGAS are reviewed, to exemplify scientific questions that can be tackled by integrated ecosystem survey data. Advantages and challenges of the survey are discussed and put into the context of marine ecosystem surveys in the European Marine Strategy Framework Directive and the Please note that this is an author-produced PDF of an article accepted for publication following peer review. The definitive publisher-authenticated version is available on the publisher Web site. Common Fisheries Policy. Highlights ► The PELGAS integrated survey conducted since 2000 in spring in the Bay of Biscay is presented. ► PELGAS objectives have switched from the study of the anchovy stock status to ecosystem monitoring. ► Spatially-explicit data have been collected of the main pelagic ecosystem components since 2000. ► Multidisciplinary collaborative working and enough vessel space were critical success factors. ► Finding relevant common scales is essential to analyse ecosystem data within or across compartments.

Abstract. Validation of the age determination procedure using otoliths of European anchovy in the Bay of Biscay was achieved by monitoring very strong year-classes in successive spring catches and surveys, as well as the seasonal occurrence of edge types. Historical corroboration of the ageing method was obtained by cross-correlation between successive age groups by year-classes in catches and surveys . Summary annual growth in length is also presented. Yearly annuli consist of a hyaline zone (either single or composite) and a wide opaque zone, disrupted occasionally by some typical checks (mainly at age-0 and age-1 at peak spawning time). Age determination, given a date of capture, requires knowledge of the typical annual growth pattern of otoliths, their seasonal edge formation by ages and the most typical checks. Most opaque growth occurs in summer and is minimal (translucent) in winter. Opaque zone formation begins earlier in younger fish (in spring), and this helps distinguish age-1 from age-2þ.

In the Bay of Biscay, mean body length and weight of sardines (Sardina pilchardus) have been decreasing since the early 2000s and could severely impact the fishing and seafood industry sector. These trends have no apparent link with fishing pressure, although the latter has been increasing since the late 2000s. As part of an effort to develop suitable assessment and management tools for this stock, we investigated the life-history traits of sardine and analyze its seasonal and inter-annual variations. Based on 14 years of morphometric data from both scientific surveys and professional samples, we analyzed the variability in sardine body condition and its responses to environmental changes. Generalized Additive Models revealed an age-sex specific decreasing trend in body length over the study period, with most of the variability explained by the age class. Linear Mixed Effect Models applied to the body condition evidenced its strong seasonality and an age class specific decreasing trend. Regardless of age class, maximal body condition is reached at the end summer, after the spawning and plankton productive periods. Overall, annual trends in body condition-at-age showed remarkable coherence, with a significant decrease since 2007 for all age classes, suggesting that factors influencing body condition operate at population level. The shift in sardine body condition towards lower values could be broken down into three periods, with a high dependence on surface Chlorophyll-a and sea surface temperature. However, this study highlights that the period supporting the main decrease in body condition is characterized by high Chlorophyll-a, the available proxy for food, which is counterintuitive. Such a result suggests more complex trophic responses involving secondary production, with potential shift in the timing of the production and/or the quality of the food. At the population level, those changes may have a long-term negative effect, with a decrease in body length and important changes in phenology (length at first maturity, reproductive phenology) and potential consequences on sardine population dynamics in the Bay of Biscay. Highlights► Strong dependence on age of both seasonal and inter-annual variability in body condition. ► Sardine body condition strongly declined between 2007 and 2011. ► Increase of temperature and changes in Chlorophyll-a may explain the decreasing trend in body condition. ► High levels of Chlorophyll-a during the critical phase (2007)(2008)(2009)(2010)(2011) suggest that food quality rather than quantity is involved.

This paper is a practical contribution to two important debates raised by the implementation of marine ecosystem based management: (i) which ecosystem data can be provided by a fisheries survey optimised for ecosystem monitoring; and (ii) how to combine/select potential indicators to derive useful information on marine ecosystem status and dynamics? A suite of 143 potential indicators, including spatial indices, representing small pelagic fish and their biotic and abiotic environments are presented. Indicators were routinely derived from the PELGAS integrated ecosystem survey conducted in spring in the Bay of Biscay (BoB). The general patterns over time in this suite of 5-16 years, non-stationary time series are characterised using a methodology based on min-max autocorrelation factors (MAF), to select the most continuous indicators within, and across, several ecosystem components: hydrology, phytoplankton, mesozooplankton, small pelagic fish and megafauna. Potential interactions between selected indicators and external forcing variables, including climate and fishing, were assessed. The results confirm the importance of river discharges, bottom temperature, chlorophyll-a and mesozooplankton biomass in the dynamics of the BoB pelagic ecosystem. Small pelagic fish species appear to have followed distinct trajectories during the last 15 years. A marked decrease in anchovy and sardine mean weights at ages 1 and 2 over the last 15 years was highlighted; potentially caused by density-dependent competition. The quasi-absence of significant correlation between selected survey indicators and climate and fishing pressure proxies suggests a moderate exploitation rate of small pelagic fish resources, and confirms the so far limited effects of large-scale climate forcing on the BoB pelagic ecosystem. Perspectives for the assessment of marine ecosystem status on the basis of suites of indicators derived from integrated ecosystem surveys are discussed. Highlights ► A method for selecting relevant ecosystem indicators is applied to PELGAS integrated survey. ► River plume, bottom temperature, phyto & mesozooplankton selected as hydrobiology indicators. ► Small pelagic fish species appear to have followed distinct trajectories over the last 15 years. ► A marked decrease in mean weights of age 1 & 2 anchovy and sardine over the last 15 years is highlighted. ► Low impact of fishing and no effect of climate forcing on pelagic ecosystem in spring are confirmed.

Highlights ► Exploration of energy density sources of variability: species, season, region, size. ► Relationships between dry mass content and ED are strong but species specific. ► Larger length, mass and ED at age in the English Channel than in the Bay of Biscay. ► Sardine display larger energy reserves than anchovy. ► Larger reserves are likely in link with larger spawning or maintenance costs. ► A strong scaling of ED with size with a dome shape pattern for sardine. ► Decrease of ED with size is discussed in link with feeding and spawning behaviours.