Data sharing is one of the cornerstones of modern science that enables large-scale analyses and reproducibility. We evaluated data availability in research articles across nine disciplines in Nature and Science magazines and recorded corresponding authors’ concerns, requests and reasons for declining data sharing. Although data sharing has improved in the last decade and particularly in recent years, data availability and willingness to share data still differ greatly among disciplines. We observed that statements of data availability upon (reasonable) request are inefficient and should not be allowed by journals. To improve data sharing at the time of manuscript acceptance, researchers should be better motivated to release their data with real benefits such as recognition, or bonus points in grant and job applications. We recommend that data management costs should be covered by funding agencies; publicly available research data ought to be included in the evaluation of applications; and surveillance of data sharing should be enforced by both academic publishers and funders. These cross-discipline survey data are available from the plutoF repository.
Forest fires are a common natural disturbance in forested ecosystems and have a large impact on the microbial communities in forest soils. The response of soil fungal communities to forest fire is poorly documented. Here, we investigated fungal community structure and function across a 152-year boreal forest fire chronosequence using high-throughput sequencing of the internal transcribed spacer 2 (ITS2) region and a functional gene array (GeoChip). Our results demonstrate that the boreal forest soil fungal community was most diverse soon after a fire disturbance and declined over time. The differences in the fungal communities were explained by changes in the abundance of basidiomycetes and ascomycetes. Ectomycorrhizal (ECM) fungi contributed to the increase in basidiomycete abundance over time, with the operational taxonomic units (OTUs) representing the genera Cortinarius and Piloderma dominating in abundance. Hierarchical cluster analysis by using gene signal intensity revealed that the sites with different fire histories formed separate clusters, suggesting differences in the potential to maintain essential biogeochemical soil processes. The site with the greatest biological diversity had also the most diverse genes. The genes involved in organic matter degradation in the mature forest, in which ECM fungi were the most abundant, were as common in the youngest site, in which saprotrophic fungi had a relatively higher abundance. This study provides insight into the impact of fire disturbance on soil fungal community dynamics.
Boreal forest soils play an important role in the global carbon cycle (1) and are a net sink for atmospheric CO 2 (2, 3). Approximately 16% of the terrestrial carbon (C) stock is estimated to be stored in the boreal forest ecosystem (1). Fire is a natural disturbance in most forest ecosystems (4), and about 1% of the boreal forest burns annually (5). The frequency of forest fires in the northern boreal zone is expected to increase because of rising temperatures and more frequent dry periods resulting from ongoing climate change (6).Soil microbes perform essential ecological functions in forested ecosystems via nutrient cycling and decomposition of organic matter. Microbial activities control the turnover of organic C in soil and thus contribute to global C cycling (7). Fungi are the predominant decomposers in boreal soils and play a central role in the turnover of carbon and nitrogen (8). Ectomycorrhizal fungi form symbioses with both trees and ground vegetation in boreal forests. Many species of ground vegetation can additionally form symbioses with ericoid mycorrhizal fungi. Boreal forest ecosystem productivity is linked to plant nutrient acquisition from the microbial community via soil organic matter (SOM) decomposition. Forest fires result in the loss of mycorrhizal host plants and may modify the SOM chemistry, leading to dramatic changes in soil microbial activity (9, 10). Fire disturbance often increases soil pH and causes changes in soil temperature due to loss of canopy cover, bo...
Abstract. The condition of forest ecosystems depends on the temporal and spatial pattern of management interventions and natural disturbances. Remnants of previous conditions persisting after disturbances, or ecosystem legacies, collectively comprise ecosystem memory. Ecosystem memory in turn contributes to resilience and possibilities of ecosystem reorganization following further disturbance. Understanding the role of disturbance and legacies is a prerequisite for maintaining resilience in the face of global change. Several legacy concepts discussed in the peer-reviewed literature, including disturbance, biological, soil, land-use, and silvicultural legacies, overlap in complex ways. Here, we review these established legacy concepts and propose that the new terms "material legacy" (individuals or matter, e.g., survivors, coarse woody debris, nutrients left after disturbance) and "information legacy" (adaptations to historical disturbance regimes) cut across these previous concepts and lead to a new classification of legacies. This includes six categories: material legacies with above-and belowground, and biotic and abiotic categories, and information legacies with above-and belowground categories. These six legacies are influenced by differential patterns of editing and conditioning by "legacy syndromes" that result from natural or human-manipulated disturbance regimes that can be arranged along a gradient of naturalness. This scheme is applied to a case study of hemiboreal forests in the Baltic States of Estonia, Latvia, and Lithuania, where natural disturbance, traditional clearcut silviculture, and afforestation of abandoned agricultural lands constitute the three main legacy syndromes. These legacy syndromes in turn influence forest response to management actions and constrain resilience, leading to a mosaic of natural, manipulated, and artificial (novel) ecosystems across the landscape, depending on how the legacies in each syndrome affect ecological memory.
Forest fires are one of the most important natural disturbances in boreal forests, and their occurrence and severity are expected to increase as a result of climate warming. A combination of factors induced by fire leads to a thawing of the near-surface permafrost layer in subarctic boreal forest. Earlier studies reported that an increase in the active layer thickness results in higher carbon dioxide (CO) and methane (CH) emissions. We studied changes in CO, CH and nitrous oxide (NO) fluxes in this study, and the significance of several environmental factors that influence the greenhouse gas (GHG) fluxes at three forest sites that last had fires in 2012, 1990 and 1969, and we compared these to a control area that had no fire for at least 100years. The soils in our study acted as sources of CO and NO and sinks for CH. The elapsed time since the last forest fire was the only factor that significantly influenced all studied GHG fluxes. Soil temperature affected the uptake of CH, and the NO fluxes were significantly influenced by nitrogen and carbon content of the soil, and by the active layer depth. Results of our study confirm that the impacts of a forest fire on GHGs last for a rather long period of time in boreal forests, and are influenced by the fire induced changes in the ecosystem.
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