Speciation is a complex process that is fundamental to the origins of biological diversity. While there has been considerable progress in our understanding of speciation, there are still many unanswered questions, especially regarding barriers to gene flow in diverging populations. Eucalyptus is an appropriate system for investigating speciation mechanisms since it comprises species that are rapidly evolving across heterogeneous environments. We examined patterns of genetic variation within and among six closely related Eucalyptus species in subgenus Eucalyptus section Eucalyptus in south-eastern Australia (commonly known as the "green ashes"). We used reduced representation genome sequencing to genotype samples from populations across altitudinal and latitudinal gradients. We found one species, Eucalyptus cunninghamii, to be highly genetically differentiated from the others, and a population of mallees from Mount Banks to be genetically distinct and therefore likely to be a new undescribed species. Only modest levels of differentiation were found between all other species in the study. There was population structure within some species (e.g., E. obstans) corresponding to geographical factors, indicating that vicariance may have played a role in the evolution of the group. Overall, we found that lineages within the green ashes are differentiated to varying extents, from strongly diverged to much earlier stages of the speciation continuum. Furthermore, our results suggest the green ashes represent a group where a range of mechanisms (e.g., reticulate evolution and vicariance) have been operating in concert. These findings not only offer insights into recent speciation mechanisms in Eucalyptus, but also other species complexes.

Newnes Plateau Shrub Swamps are a series of low nutrient temperate montane peat swamps around 1100 m elevation in the upper Blue Mountains, west of Sydney (lat 33° 23' S; long 150° 13'E). Transect-based vegetation studies show a closely related group of swamps with expanses of permanently moist, gently sloping peatlands. Vegetation patterns are related to surface hydrology and subsurface topography, which determine local peat depth. While there is evidence that a group of the highest elevation swamps on the western side of the Plateau are more dependent on rainwater, the majority of swamps, particularly those in the Carne Creek catchment, and east and south of it, may be considered primarily groundwater dependent with a permanently high watertable maintained by groundwater aquifers. An integral part of the swamps are a number of threatened groundwater dependent biota (plants-Boronia deanei subsp. deanei, Dillwynia stipulifera, dragonfly-Petalura gigantea, lizard-Eulamprus leuraensis), which are obligate swamp dwellers. This association of dependence leaves the entire swamp ecosystem highly susceptible to threats from any loss of groundwater, the current major one being the impact of damage to the confining aquicludes, aquitards, aquifers and peat substrates as a result of subsidence associated with longwall mining. Impacts on the swamps may also result from changes to hydrology through damming of creeks, mine waste water discharge, increased moisture competition from pine plantations, recreational motorbike and off-road vehicle tracks and climate change.If these groundwater dependent ecosystems do not receive protection from activities such as longwall mining subsidence, significant ecological damage is unlikely to be avoided or able to be mitigated even where provisions of the Commonwealth Environment Protection and Biodiversity Conservation and NSW Threatened Species Conservation Acts apply to groundwater dependent swamps and biota. The importance of the highest elevation part of the Plateau for a number of restricted (some endemic) plant species is also discussed.

Remnants of native riparian vegetation on the floodplain of the Hawkesbury–Nepean River near Sydney, have significant conservation value, but contain a large component of weeds (i.e. exotic species that have become naturalized). A proposal for the introduction of environmental flows required an assessment of potential impacts on 242 native and 128 exotic species recorded along 215 km of the river. The likely effects of frequency, season, depth and duration of inundation were considered in relation to habitat, dispersal season and tolerance to waterlogging. Overseas studies provided only limited information applicable to the study area; however, comparisons with similarly highly modified riparian habitats in New Zealand were instructive. Depth and season of inundation appear to be the variables with the greatest potential for differential effects on weeds and native plants. Because of likely spread of propagules and enhancement of growth under the present nutrient‐enriched conditions, environmental flows that would cause more frequent flooding to higher levels of the riparian zone were judged to be of more benefit to weed species than native species, unless supported by bushland management including weeding. Predictions were limited by incomplete data on Hawkesbury–Nepean species, but two types of environmental flow were judged to be potentially beneficial for native water‐edge plants, and worth testing and monitoring: first, flows that maintain continuous low‐level flow in the river, and second, higher level environmental flows restricted to the river‐edge habitat in autumn (the season in which a greater proportion of native species than weed species are known to disperse propagules). In summary, the presence of environmental weeds in riparian vegetation constrain the potential for environmental flows to improve river health. However, with ongoing monitoring, careful choice of water level and season of flow may lead to environmental flows that add to our knowledge, and benefit riparian vegetation along with other river system components.

Situated on the southeastern coast at 34�S 151�E, Sydney was established in 1788 as Australia's first permanent European settlement. Clearing of natural vegetation and environmental degradation associated with the country's largest population concentration over the past 200 years have severely affected the nearby Hawkesbury-Nepean River. A strategy for rehabilitation of the riparian vegetation to conserve and enhance the natural conditions remaining along the river, with particular emphasis on habitat and natural biodiversity, has been developed. The study area encompassed the most modified part of the river, where it passes alternately through 80 km of sandstone terrain, where the natural vegetation of waterside scrub backed by open-forest remains largely unchanged, and 135 km of floodplain terrain, where most of the indigenous tall open-forest has been cleared and associated wetlands have been greatly modified. Indigenous riparian zone vegetation was recognized as critical to the maintenance of river health, providing a reservoir of biodiversity as a major value, upon which other values, including enhancement of water quality, bank stablility and erosion control, depend. As 47 per cent of study area riverbank was found to have less than 25 per cent tree cover, the strategy recommended that all remnant native vegetation and remnant native trees along the river be protected and that a substantial long-term aim should be the establishment of a 50-metre wide strip of native riparian forest vegetation on each bank along the full length of the river, to be linked ultimately with other areas of natural vegetation on the floodplain. To provide practical resources for revegetation, the strategy assembled a botanical database, including maps showing present tree cover and the past extent of floodplain vegetation types, descriptions and locations of sites where significant native riparian vegetation remains, ecological information on approximately 300 locally indigenous riparian and wetland plant species, guidelines on selection of appropriate species, replanting methods and determination of priorities at both site and landscape scale.

Understanding the mechanisms underlying species divergence remains a central goal in evolutionary biology. Landscape genetics can be a powerful tool for examining evolutionary processes. We used genome‐wide scans to genotype samples from populations of eight Angophora species. Angophora is a small genus within the eucalypts comprising common and rare species in a heterogeneous landscape, making it an appropriate group to study speciation. We found A. hispida was highly differentiated from the other species. Two subspecies of A. costata (subsp. costata and subsp. euryphylla) formed a group, while the third (subsp. leiocarpa, which is only distinguished by its smooth fruits and provenance) was supported as a distinct pseudocryptic species. Other species that are morphologically distinct could not be genetically differentiated (e.g., A. floribunda and A. subvelutina). Distribution and genetic differentiation within Angophora were strongly influenced by temperature and humidity, as well as biogeographic barriers, particularly rivers and higher elevation regions. While extensive introgression was found between many populations of some species (e.g., A. bakeri and A. floribunda), others only hybridized at certain locations. Overall, our findings suggest multiple mechanisms drove evolutionary diversification in Angophora and highlight how genome‐wide analyses of related species in a diverse landscape can provide insights into speciation.

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