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About 60% of southern Africa’s population lives in rural areas with limited access to basic services and amenities such as clean and safe water, affordable and clean energy, and balanced and nutritious diets. Resource scarcity has direct and indirect impacts on nutrition, human health, and well-being of mostly poor rural communities. Climate change impacts in the region are manifesting through low crop yields, upsurge of vector borne diseases (malaria and dengue fever), and water and food-borne diseases (cholera and diarrhoea). This study applied a water–energy–food (WEF) nexus analytical livelihoods model with complex systems understanding to assess rural livelihoods, health, and well-being in southern Africa, recommending tailor-made adaptation strategies for the region aimed at building resilient rural communities. The WEF nexus is a decision support tool that improves rural livelihoods through integrated resource distribution, planning, and management, and ensures inclusive socio-economic transformation and development, and addresses related sustainable development goals, particularly goals 2, 3, 6 and 7. The integrated WEF nexus index for the region was calculated at 0.145, which is marginally sustainable, and indicating the region’s exposure to vulnerabilities, and reveals a major reason why the region fails to meet its developmental targets. The integrated relationship among WEF resources in southern Africa shows an imbalance and uneven resource allocation, utilisation and distribution, which normally results from a ‘siloed’ approach in resource management. The WEF nexus provides better adaptation options, as it guides decision making processes by identifying priority areas needing intervention, enhancing synergies, and minimising trade-offs necessary for resilient rural communities. Our results identified (i) the trade-offs and unintended negative consequences for poor rural households’ livelihoods of current silo approaches, (ii) mechanisms for sustainably enhancing household water, energy and food security, whilst (iii) providing direction for achieving SDGs 2, 3, 6 and 7.

Climate change is a complex and cross-cutting problem that needs an integrated and transformative systems approach to respond to the challenge. Current sectoral approaches to climate change adaptation initiatives often create imbalances and retard sustainable development. Regional and international literature on climate change adaptation opportunities and challenges applicable to southern Africa from a water-energy-food (WEF) nexus perspective was reviewed. Specifically, this review highlights climate change impacts on water, energy, and food resources in southern Africa, while exploring mitigation and adaptation opportunities. The review further recommends strategies to develop cross-sectoral sustainable measures aimed at building resilient communities. Regional WEF nexus related institutions and legal frameworks were also reviewed to relate the WEF nexus to policy. Southern Africa is witnessing an increased frequency and intensity in climate change-associated extreme weather events, causing water, food, and energy insecurity. A projected reduction of 20% in annual rainfall by 2080 in southern Africa will only increase the regional socio-economic challenges. This is exacerbating regional resource scarcities and vulnerabilities. It will also have direct and indirect impacts on nutrition, human well-being, and health. Reduced agricultural production, lack of access to clean water, sanitation, and clean, sustainable energy are the major areas of concern. The region is already experiencing an upsurge of vector borne diseases (malaria and dengue fever), and water and food-borne diseases (cholera and diarrhoea). What is clear is that climate change impacts are cross-sectoral and multidimensional, and therefore require cross-sectoral mitigation and adaptation approaches. In this regard, a well-coordinated and integrated WEF nexus approach offers opportunities to build resilient systems, harmonise interventions, and mitigate trade-offs and hence improve sustainability. This would be achieved through greater resource mobilisation and coordination, policy convergence across sectors, and targeting nexus points in the landscape. The WEF nexus approach has potential to increase the resilience of marginalised communities in southern Africa by contributing towards attaining the Sustainable Development Goals (SDGs 1, 2, 3, 6, 7, and 13).

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Increasing agricultural productivity has always been a prominent feature on the regional agenda due to a high incidence of food and nutrition insecurity. This review assessed the current status of irrigated agriculture in southern Africa from a water–energy–food (WEF) nexus perspective. Gaps and opportunities for improving irrigated agriculture within the context of the WEF nexus were also assessed in terms of the feasible limits to which they can be exploited. Southern Africa faces water scarcity, and climate projections show that member states will face increased physical and/or economic water scarcity by as early as 2025, which will have negative impacts on water, energy and food production. Recurrent droughts experienced across the region reaffirm the sensitive issues of food and energy insecurity as well as water scarcity. Projections of an increasing population within the region indicate increased water, energy and food demand. With agriculture already accounting for about 70% of water withdrawals, increasing the area under irrigation will place additional demand on already strained energy grids and scarce water resources. This poses the question—is increasing irrigated agriculture a solution to improving water access, food security and energy supply? While there are prospects for increasing the area under irrigation and subsequent improvement in agricultural productivity, adopting a WEF nexus approach in doing so would mitigate trade-offs and unintended consequences. Consideration of the WEF nexus in integrated resources planning and management eliminates the possibilities of transferring problems from one sector to other, as it manages synergies and trade-offs. While it is acknowledged that improving water productivity in irrigated agriculture could reduce water and energy use while increasing yield output, there is a need to decide how such savings would then be reallocated. Any intervention to increase the irrigated area should be done in the context of a WEF nexus analytical framework to guide policy and decision-making. Technical planning should evolve around the WEF nexus approach in setting targets, as WEF nexus indicators would reveal the performance and impact of proposed interventions on any of the three WEF nexus components.

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Metabarcoding is an emerging method in which DNA barcoding is combined with next-generation sequencing to determine the biodiversity of taxonomically complex samples. We assessed the current state of DNA barcode reference databases for marine zooplankton in South Africa and undertook a metabarcoding analysis to determine the species composition of samples collected with plankton tow nets. Analysis of DNA sequences mined from the literature and in online barcode reference databases revealed incomplete records for all taxa examined. Barcode records were dominated by meroplanktonic species with commercially important life-history phases (fishes and decapod crustaceans) and by species occurring in easily accessible nearshore habitats. Holoplanktonic species were underrepresented, despite making up the bulk of zooplankton biodiversity, including most potential indicator species. Metabarcoding analysis of plankton samples could identify 45% of amplicon sequence variants to species level based on BOLD databases (123 species) and similar numbers using GenBank and the MIDORI COI classifier. Morphological analysis of samples could not achieve comparable resolution at species level, but with some exceptions it recovered similar classes of organisms to those found by metabarcoding. The need for integrative molecular/morphological studies to increase and validate barcode reference databases of key zooplankton taxa is recognised. Metabarcoding of marine zooplankton in South Africa has now been successfully undertaken and the methodology is expected to facilitate high-resolution monitoring of zooplankton biodiversity in pelagic ecosystems and accelerate the discovery of new species.

The missing link between cross-sectoral resource utilisation and management, and full-scale adoption of the water-energy-food (WEF) nexus has been lack of analytical tools to support policy and decision-making. This paper defined WEF nexus sustainability indicators and developed a methodology to calculate composite indices to facilitate WEF nexus performance, monitoring and evaluation. WEF nexus indicators were integrated through the Analytic Hierarchy Process (AHP) in a multi-criteria decision-making (MCDM). Data were normalised to determine composite indices. The method established quantitative relationships among WEF nexus sectors to indicate resource utilisation and performance over time, using South Africa as a case study. A spider graph of normalised indices was used to illustrate WEF nexus indicator performance and inter-relationships, providing a synopsis of the level of interactions and inter-connectedness of WEF nexus sectors. The shape of the spider graph is determined by the level of the interdependencies and interactions among the WEF nexus sectors, whose management is viewed either as sustainable or unsustainable depending on the classification of the developed integrated index. The spider graph produced for South Africa shows an over emphasis on food self-sufficiency and water productivity at the expense of other sectors, which results from the sectoral approach in resource management. Although the calculated integrated index of 0.203 for South Africa is classified as lowly sustainable, the emphasis is on the quantitative relationships among the indicators and on how to improve them to achieve sustainability. The developed method provides evidence to decision makers, indicating priority areas for intervention. The analytical model is another niche area for the WEF nexus, as it is now capable to evaluate synergies and trade-offs in a holistic way to improve efficiency and productivity in resource use and management for sustainable development.