Spatial point processes have been successfully used to model the relative efficiency of shot locations for each player in professional basketball games. Those analyses were possible because each player makes enough baskets to reliably fit a point process model. Goals in hockey are rare enough that a point process cannot be fit to each player’s goal locations, so novel techniques are needed to obtain measures of shot efficiency for each player. A Log-Gaussian Cox Process (LGCP) is used to model all shot locations, including goals, of each NHL player who took at least 500 shots during the 2011–2018 seasons. Each player’s LGCP surface is treated as an image and these images are then used in an unsupervised statistical learning algorithm that decomposes the pictures into a linear combination of spatial basis functions. The coefficients of these basis functions are shown to be a very useful tool to compare players. To incorporate goals, the locations of all shots that resulted in a goal are treated as a “perfect player” and used in the same algorithm (goals are further split into perfect forwards, perfect centres and perfect defence). These perfect players are compared to other players as a measure of shot efficiency. This analysis provides a map of common shooting locations, identifies regions with the most goals relative to the number of shots and demonstrates how each player’s shot location differs from scoring locations.
Genetic sequencing is subject to many different types of errors, but most analyses treat the resultant sequences as if they are known without error. Next generation sequencing methods rely on significantly larger numbers of reads than previous sequencing methods in exchange for a loss of accuracy in each individual read. Still, the coverage of such machines is imperfect and leaves uncertainty in many of the base calls. In this work, we demonstrate that the uncertainty in sequencing techniques will affect downstream analysis and propose a straightforward method to propagate the uncertainty. Our method (which we have dubbed Sequence Uncertainty Propagation, or SUP) uses a probabilistic matrix representation of individual sequences which incorporates base quality scores as a measure of uncertainty that naturally lead to resampling and replication as a framework for uncertainty propagation. With the matrix representation, resampling possible base calls according to quality scores provides a bootstrap- or prior distribution-like first step towards genetic analysis. Analyses based on these re-sampled sequences will include a more complete evaluation of the error involved in such analyses. We demonstrate our resampling method on SARS-CoV-2 data. The resampling procedures add a linear computational cost to the analyses, but the large impact on the variance in downstream estimates makes it clear that ignoring this uncertainty may lead to overly confident conclusions. We show that SARS-CoV-2 lineage designations via Pangolin are much less certain than the bootstrap support reported by Pangolin would imply and the clock rate estimates for SARS-CoV-2 are much more variable than reported.
Research on the occurrence and the final size of wildland fires typically models these two events as two separate processes. In this work, we develop and apply a compound process framework for jointly modelling the frequency and the severity of wildland fires. Separate modelling structures for the frequency and the size of fires are linked through a shared random effect. This allows us to fit an appropriate model for frequency and an appropriate model for size of fires while still having a method to estimate the direction and strength of the relationship (e.g., whether days with more fires are associated with days with large fires). The joint estimation of this random effect shares information between the models without assuming a causal structure. We explore spatial and temporal autocorrelation of the random effects to identify additional variation not explained by the inclusion of weather related covariates. The dependence between frequency and size of lightning-caused fires is found to be negative, indicating that an increase in the number of expected fires is associated with a decrease in the expected size of those fires, possibly due to the rainy conditions necessary for an increase in lightning. Person-caused fires were found to be positively dependent, possibly due to dry weather increasing human activity as well as the amount of dry few. For a test for independence, we perform a power study and find that simply checking whether zero is in the credible interval of the posterior of the linking parameter is as powerful as more complicated tests.
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