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To illuminate rifting processes across the Transition Zone between the extensional Great Basin and stable Colorado Plateau interior, we collected an east‐west profile of 117 wideband and 30 long‐period magnetotelluric (MT) soundings along latitude 38.5°N from southeastern Nevada across Utah to the Colorado border. Regularized two‐dimensional inversion shows a strong lower crustal conductor below the Great Basin and its Transition Zone in the 15–35 km depth range interpreted as reflecting modern basaltic underplating, hybridization, and hydrothermal fluid release. This structure explains most of the geomagnetic variation anomaly in the region first measured in the late 1960s. Hence, the Transition Zone, while historically included with the Colorado Plateau physiographically, possesses a deep thermal regime and tectonic activity like that of the Great Basin. The deep crustal conductor is consistent with a rheological profile of a brittle upper crust over a weak lower crust, in turn on a stronger upper mantle (jelly sandwich model). Under the incipiently faulted Transition Zone, the conductor implies a vertically nonuniform mode of extension resembling early stages of continental margin formation. Colorado Plateau lithosphere begins sharply below the western boundary of Capitol Reef National Park as a resistive keel in the deep crust and upper mantle, with only a thin and weak Moho‐level crustal conductor near 45 km depth. Several narrow, steep conductors connect conductive lower crust with major surface faulting, some including modern geothermal systems, and in the context of other Great Basin MT surveying suggest connections between deep magma‐sourced fluids and the upper crustal meteoric regime. The MT data also suggest anisotropically interconnected melt over a broad zone in the upper mantle of the eastern Great Basin which has supplied magma to the lower crust, consistent with extensional mantle melting models and local shear wave splitting observations. We support a hypothesis that the Transition Zone location and geometry ultimately reflect the middle Proterozoic suturing between the stronger Yavapai lithosphere to the east and the somewhat weaker Mojave terrane to the west. We conclude that strength heterogeneity is the primary control on locus of deformation across the Transition Zone, with modulating force components.

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