The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny that includes all major groups. The situation is most critical for a large clade of spiny-finned fishes, traditionally referred to as percomorphs, whose uncertain relationships have plagued ichthyologists for over a century. Most of what we know about the higher-level relationships among fish lineages has been based on morphology, but rapid influx of molecular studies is changing many established systematic concepts. We report a comprehensive molecular phylogeny for bony fishes that includes representatives of all major lineages. DNA sequence data for 21 molecular markers (one mitochondrial and 20 nuclear genes) were collected for 1410 bony fish taxa, plus four tetrapod species and two chondrichthyan outgroups (total 1416 terminals). Bony fish diversity is represented by 1093 genera, 369 families, and all traditionally recognized orders. The maximum likelihood tree provides unprecedented resolution and high bootstrap support for most backbone nodes, defining for the first time a global phylogeny of fishes. The general structure of the tree is in agreement with expectations from previous morphological and molecular studies, but significant new clades arise. Most interestingly, the high degree of uncertainty among percomorphs is now resolved into nine well-supported supraordinal groups. The order Perciformes, considered by many a polyphyletic taxonomic waste basket, is defined for the first time as a monophyletic group in the global phylogeny. A new classification that reflects our phylogenetic hypothesis is proposed to facilitate communication about the newly found structure of the tree of life of fishes. Finally, the molecular phylogeny is calibrated using 60 fossil constraints to produce a comprehensive time tree. The new time-calibrated phylogeny will provide the basis for and stimulate new comparative studies to better understand the evolution of the amazing diversity of fishes.

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Accurately mapping the spatial distribution of forests in sub-humid to semi-arid regions over time is important for forest management but a challenging task. Relatively large uncertainties still exist in the spatial distribution of forests and forest changes in the sub-humid and semi-arid regions. Numerous publications have used either optical or synthetic aperture radar (SAR) remote sensing imagery, but the resultant forest cover maps often have large errors. In this study, we propose a pixel- and rule-based algorithm to identify and map annual forests from 2007 to 2010 in Oklahoma, USA, a transitional region with various climates and landscapes, using the integration of the L-band Advanced Land Observation Satellite (ALOS) PALSAR Fine Beam Dual Polarization (FBD) mosaic dataset and Landsat images. The overall accuracy and Kappa coefficient of the PALSAR/Landsat forest map were about 88.2% and 0.75 in 2010, with the user and producer accuracy about 93.4% and 75.7%, based on the 3270 random ground plots collected in 2012 and 2013. Compared with the forest products from Japan Aerospace Exploration Agency (JAXA), National Land Cover Database (NLCD), Oklahoma Ecological Systems Map (OKESM) and Oklahoma Forest Resource Assessment (OKFRA), the PALSAR/Landsat forest map showed great improvement. The area of the PALSAR/Landsat forest was about 40,149 km2 in 2010, which was close to the area from OKFRA (40,468 km2), but much larger than those from JAXA (32,403 km2) and NLCD (37,628 km2). We analyzed annual forest cover dynamics, and the results show extensive forest cover loss (2761 km2, 6.9% of the total forest area in 2010) and gain (3630 km2, 9.0%) in southeast and central Oklahoma, and the total area of forests increased by 684 km2 from 2007 to 2010. This study clearly demonstrates the potential of data fusion between PALSAR and Landsat images for mapping annual forest cover dynamics in sub-humid to semi-arid regions, and the resultant forest maps would be helpful to forest management.

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