The value of exotic wheat genetic resources for accelerating grain yield gains is largely unproven and unrealized. We used next-generation sequencing, together with multi-environment phenotyping, to study the contribution of exotic genomes to 984 three-way-cross-derived (exotic/elite1//elite2) pre-breeding lines (PBLs). Genomic characterization of these lines with haplotype map-based and SNP marker approaches revealed exotic specific imprints of 16.1 to 25.1%, which compares to theoretical expectation of 25%. A rare and favorable haplotype (GT) with 0.4% frequency in gene bank identified on chromosome 6D minimized grain yield (GY) loss under heat stress without GY penalty under irrigated conditions. More specifically, the ‘T’ allele of the haplotype GT originated in Aegilops tauschii and was absent in all elite lines used in study. In silico analysis of the SNP showed hits with a candidate gene coding for isoflavone reductase IRL-like protein in Ae. tauschii. Rare haplotypes were also identified on chromosomes 1A, 6A and 2B effective against abiotic/biotic stresses. Results demonstrate positive contributions of exotic germplasm to PBLs derived from crosses of exotics with CIMMYT’s best elite lines. This is a major impact-oriented pre-breeding effort at CIMMYT, resulting in large-scale development of PBLs for deployment in breeding programs addressing food security under climate change scenarios.

Ascochyta blight (AB) caused by Ascochyta rabei (Pass.) Labr. is one ofthe most important constraints that limits the productivity of chickpea (Cicer arietinum L.). The absence of high levels of stable resistant sources to the pathogen has necessitated the continued search and identification of new sources of resistance. The main aim of this work was to identify new sources of resistance to AB and validate their stability across multi-environments. A collection of 424 elite chickpea genotypes were evaluated for AB resistance under controlled environmental conditions in 2005-2006 at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India. Fifty-one genotypes with AB severity <3.0 (based on the 1-9 scale) were selected for a second round of evaluation in 2006-2007 at ICRISAT. Based on the results obtained during both years, an Ascochyta Blight Nursery (ABN) was established to evaluate the selected 29 chickpea genotypes, including 4 germplasm lines, 24

Fusarium wilt (FW; caused by Fusarium oxysporum f. sp. ciceris) and Ascochyta blight (AB; caused by Ascochyta rabiei) are two major biotic stresses that cause significant yield losses in chickpea (Cicer arietinum L.). In order to identify the genomic regions responsible for resistance to FW and AB, 188 recombinant inbred lines derived from a cross JG 62 9 ICCV 05530 were phenotyped for reaction to FW and AB under both controlled environment and field conditions. Significant variation in response to FW and AB was detected at all the locations. A genetic map comprising of 111 markers including 84 simple sequence repeats and 27 single nucleotide polymorphism (SNP) loci spanning 261.60 cM was constructed. Five quantitative trait loci (QTLs) were detected for resistance to FW with phenotypic variance explained from 6.63 to 31.55%. Of the five QTLs, three QTLs including a major QTL on CaLG02 and a minor QTL each on CaLG04 and CaLG06 were identified for resistance to race 1 of FW. For race 3, a major QTL each on CaLG02 and CaLG04 were identified. In the case of AB, one QTL for seedling resistance (SR) against 'Hisar race' and a minor QTL each for SR and adult plant resistance against isolate 8 of race 6 (3968) were identified. The QTLs and linked markers identified in this study can be utilized for enhancing the FW and AB resistance in elite cultivars using marker-assisted backcrossing.

Results of these studies revealed that both additive and non-additive gene actions were involved in the inheritance of all traits. Preponderance of additive gene action was observed in the inheritance of ten traits viz., days to 75% maturity, plant height, spikelets/panicle, grains/panicle, harvest index, grain length, grain breadth, L:B ratio, amylose content and grain yield/plant. Preponderance of non-additive gene action was observed in the inheritance of eight traits viz., days to 50% flowering, maturity period, total tillers/plant, effective tillers/plant, panicle length, spikelet fertility, biological yield/plant and test weight. Genotype HPR 3007 followed by HPR 1156 and Kasturi were identified as superior parents based on high grain yield/plant and general combining ability. HPR 3007 × HPR 2373 followed by HPR 3007 × HPR 2612, Kasturi × HPR 2612 and HPR 3007 × HPR 3010 were identified as promising crosses based on high grain yield/plant, heterosis and specific combining ability. Identified superior parents and crosses can be used as donor parents for the improvement of existing low yielding basmati cultivars.

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Ascochyta blight caused by Ascochyta rabiei, is the most destructive disease in many chickpea growing countries. Disease development varies with the growth stage and host resistance. Hence, disease development was studied in cvs ICCX 810800 (resistant), ICCV 90201 (moderately resistant), C 235 (moderately susceptible), ICCV 96029 and Pb 7 (susceptible) under controlled environment (ICRISAT, Patencheru) and field conditions (Dhaulakuan, Himachal Pradesh) at seedling, post-seedling, vegetative, flowering and podding stages. Under controlled environment, the incubation period and terminal disease reaction (TDR) did not vary significantly at different growth stages against virulent isolate AB 4. Cultivars ICCX 810800, ICCV 90201 and C 235 showed a significantly longer incubation period than the susceptible cv. Pb 7. Cultivar ICCX 810800 showed slow disease progress and the least TDR. Field experiments were conducted during the 2003-2004 and 2004-2005 growing seasons. During 2003-2004, TDR was higher in plants inoculated at podding and the flowering stage and the lowest disease reaction was recorded in ICCX 810800. A severe epidemic during 2004-2005 was attributed to the favourable temperature, humidity and well distributed high rainfall. TDR did not differ significantly at any of the growth stages in susceptible cvs ICCV 96029 and Pb 7. With respect to seeding date and cultivar, the highest yield was recorded in the early-sown crop (1,276.7 kg ha À1 ) and in ICCV 90201 (1,799.3 kg ha À1 ), respectively. The yields were greatly reduced in all the cultivars during 2004-2005 and the highest yield was recorded in ICCX 810800 (524.7 kg ha À1 ). Integrated disease management using resistant cultivars, optimum sowing period and foliar application of fungicides will improve chickpea production. The experiment under controlled environment and field conditions (during the epidemic year) showed a similar disease development.

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Domesticated lentil has a relatively narrow genetic base globally and most released varieties are susceptible to severe biotic and abiotic stresses. The crop wild relatives could provide new traits of interest for tailoring novel germplasm and cultivated lentil improvement. The primary objective of this study was to evaluate wild lentil accessions for identification of economically viable agro-morphological traits and resistance against major biotic stresses. The study has revealed substantial variations in seed yield and its important component characters. Further, the diversity analysis of wild accessions showed two major clusters which were bifurcated into sub-clusters, thereby suggesting their wider genetic divergence. However, principal component analysis exhibited that seed yield plant-1 , number of seeds plant-1 , number of pods plant-1 , harvest index and biological yield plant-1 contributed significantly to the total genetic variation assessed in wild lentil taxa. Moreover, some of the wild accessions collected from Syria and Turkey regions showed resistance against more than one disease indicating rich diversity of lentil genetic resources. The identification of most promising genotypes carrying resistance against major biotic stresses could be utilized in the cultivated or susceptible varieties of lentil for enhancing genetic gains. The study has also identified some trait specific accessions, which could also be taken into the consideration while planning distant hybridization in lentil.