The value of exotic wheat genetic resources for accelerating grain yield gains is largely unproven and unrealized. We used next-generation sequencing, together with multi-environment phenotyping, to study the contribution of exotic genomes to 984 three-way-cross-derived (exotic/elite1//elite2) pre-breeding lines (PBLs). Genomic characterization of these lines with haplotype map-based and SNP marker approaches revealed exotic specific imprints of 16.1 to 25.1%, which compares to theoretical expectation of 25%. A rare and favorable haplotype (GT) with 0.4% frequency in gene bank identified on chromosome 6D minimized grain yield (GY) loss under heat stress without GY penalty under irrigated conditions. More specifically, the ‘T’ allele of the haplotype GT originated in Aegilops tauschii and was absent in all elite lines used in study. In silico analysis of the SNP showed hits with a candidate gene coding for isoflavone reductase IRL-like protein in Ae. tauschii. Rare haplotypes were also identified on chromosomes 1A, 6A and 2B effective against abiotic/biotic stresses. Results demonstrate positive contributions of exotic germplasm to PBLs derived from crosses of exotics with CIMMYT’s best elite lines. This is a major impact-oriented pre-breeding effort at CIMMYT, resulting in large-scale development of PBLs for deployment in breeding programs addressing food security under climate change scenarios.

Botrytis grey mould (BGM), caused by Botrytis cinerea Pers. ex. Fr., is an economically important disease of chickpea (Cicer arietinum L.), especially in areas where cool, cloudy, and humid weather persists. Several epidemics of BGM causing complete crop loss in the major chickpea-producing countries have been reported. The pathogen B. cinerea mainly survives between seasons on infected crop debris and seeds. Despite extensive investigations on pathological, physiological, and molecular characteristics of B. cinerea causing grey mould type diseases on chickpea and several other hosts, the nature of infection processes and genetic basis of pathogen variability have not been clearly established. This lack of information coupled with the need for repeated application of chemical fungicides forced the deployment of host plant resistance (HPR) as a major option for BGM management. Effective and repeatable controlled-environment and field-screening techniques have been developed for identification of HPR. Of the selected portion of chickpea germplasm evaluated for BGM resistance, only few accessions belonging to both cultivated and wild Cicer spp. were tolerant to BGM, and the search for higher levels of disease resistance continues. Fungicide application based on disease predictive models is helpful in precision-based fungicide application. Integrated disease management (IDM) of BGM has proved more effective than any of the individual disease management components in large-scale, on-farm studies conducted in India, Nepal, and Bangladesh. Further information on the biology of B. cinerea and epidemiology of the disease is needed to strengthen the IDM programs. In this paper the biology of B. cinerea including its variability, epidemiology of BGM, identified sources of resistance, and other management options, and available information on biochemical and genetic basis of disease resistance have been reviewed with a mention of future research priorities.

Abstract. Effective controlled-environment and field screening techniques were developed and refined to identify resistance to Ascochyta blight (AB), caused by Ascochyta rabiei (Pass.) Labr. in chickpea. A controlled environment plant growth room facility developed for AB evaluation at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India was modified to evaluate chickpea genotypes for resistance to AB. Controlled environment screening techniques, such as a seedling screening technique using 10-day-old seedlings and cut-twig screening techniques using excised twigs (10-15cm long) were developed. Components of the screening techniques were optimized in the controlled environment-plant growth room. The controlled environment screening techniques were found to be rapid, reliable and reproducible and a positive correlation was found between the seedling and cut-twig screening techniques (r=0.94).The cut-twig screening technique was quicker than the seedling screening technique and is particularly useful in screening segregating breeding lines derived from wild Cicer spp.Results of the controlled environment screening techniques were compared with results of field screening trials carried out at Dhaulakuan and Ludhiana in India, where the pathogen is endemic. A significant positive correlation was found between results from the controlled environment and field screening techniques (r=0.88). Using these resistance screening techniques, 150 elite chickpea breeding lines were evaluated and 29 lines with high and stable resistance to AB were identified.

Yellow mosaic disease (YMD) is the major constraint of mungbean for realizing high productivity worldwide. Moreover, management of disease using YMD‐resistant genotypes is the simplest approach. Therefore, based on a preliminary screening of 220 genotypes during the year 2010 and 2011 at 17 locations, a set of 25 genotypes was further selected to evaluate at six locations over 2 years for identification of more stable resistant genotypes. The genotype and genotype × environment (GGE) analysis indicated that the genotypes and environment effects were significant (P < 0.001) for YMD incidence. Interestingly, the GGE biplot analysis successfully accounted for 74.71 per cent of the total variation with three genotypes (ML 818, ML 1349 and IPM 02‐14) showing high degree of resistance and stability over the locations. Notably, a strong positive association was observed between disease reaction and temperature, relative humidity and rainfall. As crop is grown in diverse growing environments, aforementioned genotypes can be used as stable/durable sources for future breeding programme to develop YMD‐resistant cultivars.

Ascochyta blight (AB) caused by Ascochyta rabei (Pass.) Labr. is one ofthe most important constraints that limits the productivity of chickpea (Cicer arietinum L.). The absence of high levels of stable resistant sources to the pathogen has necessitated the continued search and identification of new sources of resistance. The main aim of this work was to identify new sources of resistance to AB and validate their stability across multi-environments. A collection of 424 elite chickpea genotypes were evaluated for AB resistance under controlled environmental conditions in 2005-2006 at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India. Fifty-one genotypes with AB severity <3.0 (based on the 1-9 scale) were selected for a second round of evaluation in 2006-2007 at ICRISAT. Based on the results obtained during both years, an Ascochyta Blight Nursery (ABN) was established to evaluate the selected 29 chickpea genotypes, including 4 germplasm lines, 24

Results of these studies revealed that both additive and non-additive gene actions were involved in the inheritance of all traits. Preponderance of additive gene action was observed in the inheritance of ten traits viz., days to 75% maturity, plant height, spikelets/panicle, grains/panicle, harvest index, grain length, grain breadth, L:B ratio, amylose content and grain yield/plant. Preponderance of non-additive gene action was observed in the inheritance of eight traits viz., days to 50% flowering, maturity period, total tillers/plant, effective tillers/plant, panicle length, spikelet fertility, biological yield/plant and test weight. Genotype HPR 3007 followed by HPR 1156 and Kasturi were identified as superior parents based on high grain yield/plant and general combining ability. HPR 3007 × HPR 2373 followed by HPR 3007 × HPR 2612, Kasturi × HPR 2612 and HPR 3007 × HPR 3010 were identified as promising crosses based on high grain yield/plant, heterosis and specific combining ability. Identified superior parents and crosses can be used as donor parents for the improvement of existing low yielding basmati cultivars.

Fusarium wilt (FW; caused by Fusarium oxysporum f. sp. ciceris) and Ascochyta blight (AB; caused by Ascochyta rabiei) are two major biotic stresses that cause significant yield losses in chickpea (Cicer arietinum L.). In order to identify the genomic regions responsible for resistance to FW and AB, 188 recombinant inbred lines derived from a cross JG 62 9 ICCV 05530 were phenotyped for reaction to FW and AB under both controlled environment and field conditions. Significant variation in response to FW and AB was detected at all the locations. A genetic map comprising of 111 markers including 84 simple sequence repeats and 27 single nucleotide polymorphism (SNP) loci spanning 261.60 cM was constructed. Five quantitative trait loci (QTLs) were detected for resistance to FW with phenotypic variance explained from 6.63 to 31.55%. Of the five QTLs, three QTLs including a major QTL on CaLG02 and a minor QTL each on CaLG04 and CaLG06 were identified for resistance to race 1 of FW. For race 3, a major QTL each on CaLG02 and CaLG04 were identified. In the case of AB, one QTL for seedling resistance (SR) against 'Hisar race' and a minor QTL each for SR and adult plant resistance against isolate 8 of race 6 (3968) were identified. The QTLs and linked markers identified in this study can be utilized for enhancing the FW and AB resistance in elite cultivars using marker-assisted backcrossing.

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