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SummaryOlive (Olea europaea ssp. europaea) is the most important oil fruit crop in temperate areas, but the origin of the cultivated olive remains unclear. The existence of one or several domestication events in the Mediterranean Basin (MB) is still debated.We analyzed a dataset of 387 cultivated and wild accessions that were genotyped at 25 simple-sequence repeat (SSR) loci. The sample represented genetic diversity at the geographic extremes of the MB. We inferred relationships among samples and also applied approximate Bayesian computation to estimate the most probable demographic model of our samples.Cultivated olives clustered into three different gene pools (Q1, Q2 and Q3), corresponding loosely to the west, central and eastern MB, respectively. Q1 consisted primarily of accessions from southern Spain, retained the fingerprint of a genetic bottleneck, and was closely related to accessions from the eastern MB. Q2 showed signs of recent admixture with wild olives and may derive from a local domestication event in the central MB.Overall our results suggest that admixture shaped olive germplasm and perhaps also local domestication events.

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Summary • It is still an open question as to whether genome size (GS) variation is shaped by natural selection. One approach to address this question is a population-level survey that assesses both the variation in GS and the relationship of GS to ecological variants. • We assessed GS in Zea mays, a species that includes the cultivated crop, maize, and its closest wild relatives, the teosintes. We measured GS in five plants of each of 22 maize landraces and 21 teosinte populations from Mexico sampled from parallel altitudinal gradients. • GS was significantly smaller in landraces than in teosintes, but the largest component of GS variation was among landraces and among populations. In maize, GS correlated negatively with altitude; more generally, the best GS predictors were linked to geography. By contrast, GS variation in teosintes was best explained by temperature and precipitation. • Overall, our results further document the size flexibility of the Zea genome, but also point to a drastic shift in patterns of GS variation since domestication. We argue that such patterns may reflect the indirect action of selection on GS, through a multiplicity of phenotypes and life-history traits.

BackgroundThe cultivated olive (Olea europaea L.) is the most agriculturally important species of the Oleaceae family. Although many studies have been performed on plastid polymorphisms to evaluate taxonomy, phylogeny and phylogeography of Olea subspecies, only few polymorphic regions discriminating among the agronomically and economically important olive cultivars have been identified. The objective of this study was to sequence the entire plastome of olive and analyze many potential polymorphic regions to develop new inter-cultivar genetic markers.ResultsThe complete plastid genome of the olive cultivar Frantoio was determined by direct sequence analysis using universal and novel PCR primers designed to amplify all overlapping regions. The chloroplast genome of the olive has an organisation and gene order that is conserved among numerous Angiosperm species and do not contain any of the inversions, gene duplications, insertions, inverted repeat expansions and gene/intron losses that have been found in the chloroplast genomes of the genera Jasminum and Menodora, from the same family as Olea.The annotated sequence was used to evaluate the content of coding genes, the extent, and distribution of repeated and long dispersed sequences and the nucleotide composition pattern. These analyses provided essential information for structural, functional and comparative genomic studies in olive plastids. Furthermore, the alignment of the olive plastome sequence to those of other varieties and species identified 30 new organellar polymorphisms within the cultivated olive.ConclusionsIn addition to identifying mutations that may play a functional role in modifying the metabolism and adaptation of olive cultivars, the new chloroplast markers represent a valuable tool to assess the level of olive intercultivar plastome variation for use in population genetic analysis, phylogenesis, cultivar characterisation and DNA food tracking.

This study of ancient olives has been fruitful both for germplasm collection and for enlarging our knowledge about olive domestication. The findings suggest that grafting pre-existing wild olives with olive cultivars was linked to the beginnings of olive growing. Additionally, the low number of genotypes identified in current cultivars points out that the ancient olives from southern Spain constitute a priceless reservoir of genetic diversity.

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Core collections reflecting the diversity of large germplasm collections are valuable tools to conserve and evaluate the genetic resources more effectively. Three strategies using two different search algorithms were trained to develop the most representative nested core collection of the World Olive Germplasm Bank (WOGB) of Cordoba (Spain), the largest and best characterized collection of olive {Olea europaea L.) cultivars worldwide. The original dataset was composed of 378 olive accessions from 21 different countries characterized by 14 microsatellite markers (simple sequence repeats [SSRs]). Each nested core collection included five subsets representing different percentages of the base collection (5, 10, 15, 20, and 30%). The strategy maximizing the alíele coverage implemented in the software Core Hunter was chosen as the best. The five subsets developed by this method captured the maximum number of alíeles showing fewer significant differences in their frequencies with respect to the whole collection. Additionally, a balanced geographical composition was observed in the nested subsets in spite of the strong overrepresentation of western Mediterranean accessions present in the WCGB. The results of this study are aimed at improving both the conservation and management of olive genetic resources and the study of differential genotype x environment interactions by testing a minimum number of accessions CM. Diez, Abbreviations: Ce, Cavalli Sforza and Edwards' distance; Cv, allelic coverage index; CvCe, strategy maximizing the allelic coverage index and Cavalli Sforza and Edwards' distance simultaneously; FCA, factorial component analysis; He, expected heterozygosity; Ho, observed heterozygosity; M strategy, strategy of search used by MSTR AT; PC, principal component; SSR, simple sequence repeat; WOGB, World Olive Germplasm Bank. C LONALLY PROPAGATED FRUIT CULTIVARS are typically conserved ex situ in "live collections," which are suitably selected field plantations where the crop can fulfill its normal biological cycle. Thanks to the increasing attention paid to the protection of biodiversity, several olive {Olea etiropaea L.) germplasm ex situ collections were developed to safeguard and promote the use of genetic resources in farming. These collections ensure the long-term conservation of the genetic resources and provide easy access to plant breeders, researchers, and other users.The olive tree is currently the most extensively cultivated temperate fruit crop in the world (FAO, 2008) and is characterized by an extensive legacy of traditional cultivars (Bartolini et al., 2002;Rallo, 2005). Several collections of genetic resources have been established