Northern Australia is biologically diverse and of national and global conservation signicance. Its ancient landscape contains the world's largest area of savannah ecosystem in good ecological condition and its rivers are largely free-flowing. Agriculture, previously confined largely to open range-land grazing, is set to expand in extent and to focus much more on irrigated cropping and horticulture. Demands on the water resources of the region are thus, inevitably increasing. Reliable information is required to guide and inform development and help plan for a sustainable future for the region which includes healthy rivers that contain diverse fish assemblages. Based on a range of information sources, including the outcomes of recent and extensive new field surveys, this study maps the distribution of the 111 freshwater fishes (excluding elasmobranches) and 42 estuarine vagrants recorded from freshwater habitats of the region. We classify the habitat use and migratory biology of each species. This study provides a comprehensive assessment of the diversity and distribution of fishes of the region within a standardised nomenclatural framework. In addition, we summarise the outcomes of recent phylogeographic and phylogenetic research using molecular technologies to identify where issues of taxonomy may need further scrutiny. The study provides an informed basis for further research on the spatial arrangement of biodiversity and its relationship to environmental factors (e.g. hydrology), conservation planning and phylogentic variation within individual taxa.

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The diets of 21 terapontid species from freshwater environments in northern Australia were investigated to determine the similarity and dissimilarity among species and the extent of any ontogenetic shifts. Distinct ontogenetic dietary shifts occurred in all species for which sufficient data were available, with many species passing through several discrete trophic categories during their life histories. Diets of all juvenile terapontids were similar, mainly comprising aquatic insects and zooplankton. Larger size classes of terapontids diverged into a broad spectrum of feeding groups comprising carnivorous dietary modes (including piscivory and lepidophagy), omnivory (including frugivory and consumption of allochthonous prey), herbivory and detritivory. The results indicate that the terapontids represent Australia's most trophically diverse freshwater fish family.

Hydrological changes associated with irrigation, in conjunction with increased nutrient concentrations and aquatic plant densities, have greatly impacted fish habitat values on the Burdekin River floodplain. The two most significant weeds in the Burdekin floodplain are water hyacinth (Eichhornia crassipes) and para grass (Urochloa mutica). Water hyacinth creates a base for the para grass (and then other weeds) to grow out into deeper water, creating weed mats that can then only be removed by mechanical means or floods of the largest magnitude. We attempted to rehabilitate floodplain lagoons by the mechanical removal of floating weed mats and monitored the result by measuring the subsequent effects on fish habitats and fish communities. Prior to weed removal, fish habitats were generally of poor quality, and fish community structure was skewed away from rich native assemblages to depauperate communities dominated in some instances by alien species. Poor water quality arising from floating weed mats is considered to be the main determinant of reduced fish abundance and diversity. After mechanical weed removal, recovery of water quality and physical habitat led to the re-establishment of many native fish species. Key refuge habitats within the distribution channels were a critical source of recruits for fishes dispersing during times of elevated seasonal flows into the newly rehabilitated reaches. This study demonstrates that floating alien weed mats have significant negative effects upon aquatic communities and that mechanical removal of these weed mats (as opposed to chemical removal) results in dramatic improvements in native fish species richness and abundance.