Neurospora crassa is a central organism in the history of twentieth-century genetics, biochemistry and molecular biology. Here, we report a high-quality draft sequence of the N. crassa genome. The approximately 40-megabase genome encodes about 10,000 protein-coding genes-more than twice as many as in the fission yeast Schizosaccharomyces pombe and only about 25% fewer than in the fruitfly Drosophila melanogaster. Analysis of the gene set yields insights into unexpected aspects of Neurospora biology including the identification of genes potentially associated with red light photobiology, genes implicated in secondary metabolism, and important differences in Ca(2+) signalling as compared with plants and animals. Neurospora possesses the widest array of genome defence mechanisms known for any eukaryotic organism, including a process unique to fungi called repeat-induced point mutation (RIP). Genome analysis suggests that RIP has had a profound impact on genome evolution, greatly slowing the creation of new genes through genomic duplication and resulting in a genome with an unusually low proportion of closely related genes

We present an analysis of over 1,100 of the ∼10,000 predicted proteins encoded by the genome sequence of the filamentous fungus Neurospora crassa. Seven major areas of Neurospora genomics and biology are covered. First, the basic features of the genome, including the automated assembly, gene calls, and global gene analyses are summarized. The second section covers components of the centromere and kinetochore complexes, chromatin assembly and modification, and transcription and translation initiation factors. The third area discusses genome defense mechanisms, including repeat induced point mutation, quelling and meiotic silencing, and DNA repair and recombination. In the fourth section, topics relevant to metabolism and transport include extracellular digestion; membrane transporters; aspects of carbon, sulfur, nitrogen, and lipid metabolism; the mitochondrion and energy metabolism; the proteasome; and protein glycosylation, secretion, and endocytosis. Environmental sensing is the focus of the fifth section with a treatment of two-component systems; GTP-binding proteins; mitogen-activated protein, p21-activated, and germinal center kinases; calcium signaling; protein phosphatases; photobiology; circadian rhythms; and heat shock and stress responses. The sixth area of analysis is growth and development; it encompasses cell wall synthesis, proteins important for hyphal polarity, cytoskeletal components, the cyclin/cyclin-dependent kinase machinery, macroconidiation, meiosis, and the sexual cycle. The seventh section covers topics relevant to animal and plant pathogenesis and human disease. The results demonstrate that a large proportion of Neurospora genes do not have homologues in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. The group of unshared genes includes potential new targets for antifungals as well as loci implicated in human and plant physiology and disease

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Chitinases were isolated from the grains of wheat, barley and maize, and compared with those obtained from Serratia marcescens, Streptomyces griseus and Pseudomonas stutzeri for antifungal activity and enzyme specificity. The six enzymes were tested for antifungal activity using an assay based upon inhibition of hyphal extension of the fungi Trichoderma reesei and Phycomyces blakesleeanus. Antifungal activity was observed with as little as 1 pg of each of the grain chitinases, whereas none of the bacterial chitinases had any effect on hyphal extension, even at 50 pg chitinase per assay. This difference in antifungal activity correlated with the different mechanisms of action of the two classes of enzymes. In common with other plant chitinases, the grain chitinases functioned as endochitinases and contained lysozyme activity. In contrast, the bacterial enzymes were exochitinases and hydrolysed the chromogenic trisaccharide analogue p-nitrophenyl-P-D-N,N'-diacetylchitobiose, which proved to be an excellent substrate for assaying bacterial chitinases. These experiments strengthen the hypothesis that plant chitinases function to protect the host against fungal infections.

A 22 kDa antifungal protein (zeamatin) was purified from Zea mays seeds. It was identified and assayed by its unusual property of acting synergistically with nikkomycin to inhibit growth of Candida albicans. Alone, it inhibited growth in suspension culture of C. albicans, Neurospora crassa and Trichoderma reesei. Zeamatin contained no detectable chitinase, 1,3-P-glucanase or ribosome-inactivating protein activity, enzymes present in a variety of plants that have been shown to have antifungal properties. At low concentrations zeamatin caused the rapid release of cytoplasmic material from C. albicans and N. crassa. This was confirmed microscopically by observing zeamatin-induced hyphal rupture of these fungi. These results suggest that zeamatin permeabilizes the fungal plasma membrane. We believe zeamatin to be a representative of a previously unrecognized class of plant antifungal proteins.

SummaryCell wall biogenesis and integrity are crucial for fungal growth, pathogenesis and survival, and are attractive targets for antifungal therapy. In this study, we identify, delete and analyse mutant strains for 10 genes involved in the PKC1 signal transduction pathway and its regulation in Cryptococcus neoformans . The kinases Bck1 and Mkk2 are critical for maintaining integrity, and deletion of each of these causes severe phenotypes different from each other. In stark contrast to results seen in Saccharomyces cerevisiae , a deletion in LRG1 has severe repercussions for the cell, and one in ROM2 has little effect. Also surprisingly, the phosphatase Ppg1 is crucial for cell integrity. These data indicate that the mechanisms of maintaining cell integrity differ between the two fungi. Deletions in SSD1 and PUF4 , potential alternative regulators of cell integrity, also exhibit phenotypes. This is the first comprehensive analysis examining genes involved the maintenance of cell integrity in C. neoformans and sets the foundation for future biochemical and virulence studies.

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