Monte Carlo simulation is an essential tool in emission tomography that can assist in the design of new medical imaging devices, the optimization of acquisition protocols and the development or assessment of image reconstruction algorithms and correction techniques. GATE, the Geant4 Application for Tomographic Emission, encapsulates the Geant4 libraries to achieve a modular, versatile, scripted simulation toolkit adapted to the field of nuclear medicine. In particular, GATE allows the description of time-dependent phenomena such as source or detector movement, and source decay kinetics. This feature makes it possible to simulate time curves under realistic acquisition conditions and to test dynamic reconstruction algorithms. This paper gives a detailed description of the design and development of GATE by the OpenGATE collaboration, whose continuing objective is to improve, document and validate GATE by simulating commercially available imaging systems for PET and SPECT. Large effort is also invested in the ability and the flexibility to model novel detection systems or systems still under design. A public release of GATE licensed under the GNU Lesser General Public License can be downloaded at http:/www-lphe.epfl.ch/GATE/. Two benchmarks developed for PET and SPECT to test the installation of GATE and to serve as a tutorial for the users are presented. Extensive validation of the GATE simulation platform has been started, comparing simulations and measurements on commercially available acquisition systems. References to those results are listed. The future prospects towards the gridification of GATE and its extension to other domains such as dosimetry are also discussed.
Brain PET in small structures is challenged by low resolution inducing bias in the activity measurements. Improved spatial resolution may be obtained by using dedicated tomographs and more comprehensive modeling of the acquisition system during reconstruction. In this study, we assess the impact of resolution modeling (RM) during reconstruction on image quality and on the estimates of biologic parameters in a clinical study performed on a high-resolution research tomograph. Methods: An accelerated list-mode ordinary Poisson ordered-subset expectation maximization (OP-OSEM) algorithm, including sinogram-based corrections and an experimental stationary model of resolution, has been designed. Experimental phantom studies are used to assess contrast and noise characteristics of the reconstructed images. The binding potential of a selective tracer of the dopamine transporter is also assessed in anatomic volumes of interest in a 5-patient study. Results: In the phantom experiment, a slower convergence and a higher contrast recovery are observed for RM-OP-OSEM than for OP-OSEM for the same level of statistical noise. RM-OP-OSEM yields contrast recovery levels that could not be reached without RM as well as better visual recovery of the smallest spheres and better delineation of the structures in the reconstructed images. Statistical noise has lower variance at the voxel level with RM than without at matched resolution. In a uniform activity region, RM induces higher positive and lower negative correlations with neighboring voxels, leading to lower spatial variance. Clinical images reconstructed with RM demonstrate better delineation of cortical and subcortical structures in both time-averaged and parametric images. The binding potential in the striatum is also increased, a result similar to the one observed in the phantom study. Conclusion: In high-resolution PET, RM during reconstruction improves quantitative accuracy by reducing the partial-volume effects.
We present the results of utilizing aligned anatomical information from CT images to locally adjust image smoothness during the reconstruction of three-dimensional (3D) whole-body positron emission tomography (PET) data. The ability of whole-body PET imaging to detect malignant neoplasms is becoming widely recognized. Potentially useful, however, is the role of whole-body PET in quantitative estimation of tracer uptake. The utility of PET in oncology is often limited by the high level of statistical noise in the images. Reduction in noise can be obtained by incorporating a priori image smoothness information from correlated anatomical information during the reconstruction of PET data. A combined PET/CT scanner allows the acquisition of accurately aligned PET and x-ray CT whole-body data. We use the Fourier rebinning algorithm (FORE) to accurately convert the 3D PET data to two-dimensional (2D) data to accelerate the image reconstruction process. The 2D datasets are reconstructed with successive over-relaxation of a penalized weighted least squares (PWLS) objective function to model the statistics of the acquisition, data corrections, and rebinning. A 3D voxel label model is presented that incorporates the anatomical information via the penalty weights of the PWLS objective function. This combination of FORE + PWLS + labels was developed as it allows for both reconstruction of 3D whole-body data sets in clinically feasible times and also the inclusion of anatomical information in such a way that convergence can be guaranteed. Since mismatches between anatomical (CT) and functional (PET) data are unavoidable in practice, the labels are 'blurred' to reflect the uncertainty associated with the anatomical information. Simulated and experimental results show the potential advantage of incorporating anatomical information by using blurred labels to calculate the penalty weights. We conclude that while the effect of this method on detection tasks is complicated and unclear, there is an improvement on the estimation task.
The aim of this study was to compare eight methods for the estimation of the image-derived input function (IDIF) in [ 18 F]-FDG positron emission tomography (PET) dynamic brain studies. The methods were tested on two digital phantoms and on four healthy volunteers. Image-derived input functions obtained with each method were compared with the reference input functions, that is, the activity in the carotid labels of the phantoms and arterial blood samples for the volunteers, in terms of visual inspection, areas under the curve, cerebral metabolic rates of glucose (CMRglc), and individual rate constants. Blood-sample-free methods provided less reliable results as compared with those obtained using the methods that require the use of blood samples. For some of the bloodsample-free methods, CMRglc estimations considerably improved when the IDIF was calibrated with a single blood sample. Only one of the methods tested in this study, and only in phantom studies, allowed a reliable calculation of the individual rate constants. For the estimation of CMRglc values using an IDIF in [ 18 F]-FDG PET brain studies, a reliable absolute blood-sample-free procedure is not available yet.
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