Sediments from the continental shelf are sensitive to sea level, climatic changes, and local tectonic history. In this study, we carried out a high-resolution magnetostratigraphic investigation on the longest core (NHH01, 125.64 m) recovered from the South Yellow Sea (SYS). An abnormal interval dominated by negative inclinations was discovered by applying alternating field demagnetization (AFD) on samples from a greigite-bearing layer (44.90-51.80 m). In contrast, the inclinations of most greigite-bearing samples changed from negative to positive when heated to~360°C. This strongly indicates that this inclination anomaly revealed by the AFD alone is not a true negative subchron. After neglecting the effects of greigite-bearing layers, the straightforward correlation of the interpreted magnetostratigraphy defines the Matuyama-Brunhes boundary (781 ka) and the Jaramillo top (990 ka) at 68.64 m and 101.54 m, respectively. The linearly extrapolated basal age of the core is~1.10 Ma. In addition, several short-lived inclination anomalies can be tentatively assigned to magnetic excursions, which indicates that the sedimentation could be continuous even at the millennial time scale at depth intervals bracketing these fast geomagnetic events. Moreover, the excellent correspondence between clay content variations of the core and the marine oxygen isotope record indicates the potential of clay content as a paleoclimatic proxy in the studied region in the past~1 Ma. In brief, our study provides not only a robust age model in the SYS but also a methodological guide for paleomagnetic studies in continental shelf region.

Non-coding cis-regulatory variants in animal genomes are an important driving force in the evolution of transcription regulation and phenotype diversity. However, cistrome dynamics in plants remain largely underexplored. Here, we compare the binding of GOLDEN2-LIKE (GLK) transcription factors in tomato, tobacco, Arabidopsis, maize and rice. Although the function of GLKs is conserved, most of their binding sites are species-specific. Conserved binding sites are often found near photosynthetic genes dependent on GLK for expression, but sites near non-differentially expressed genes in the glk mutant are nevertheless under purifying selection. The binding sites’ regulatory potential can be predicted by machine learning model using quantitative genome features and TF co-binding information. Our study show that genome cis-variation caused wide-spread TF binding divergence, and most of the TF binding sites are genetically redundant. This poses a major challenge for interpreting the effect of individual sites and highlights the importance of quantitatively measuring TF occupancy.

Located at the collision boundary between the Philippine Sea Plate and the Eurasian Continental Plate, the island of Taiwan is generally recognized as an important example in the MARGINS Program Science Plan and "source-to-sink" research because of its high tectonic activity, heavy rainfall and unique geography. Large suspended sediment loads are transported to the adjacent ocean by Taiwanese rivers every year, making Taiwan an important source of sediments into the adjacent seas and a natural laboratory for studying the systemic movement of fluvial sediments from source to sink. A detailed study on the clay mineral composition of surface sediments collected from the drainage basins of 12 Taiwanese rivers using X-ray diffraction methods was conducted. Our results indicated that the clay mineral assemblages consisted dominantly of illite (approximately 73%) and chlorite (approximately 24%), with lesser abundances of kaolinite (approximately 3%) and even lower levels of smectite from the Danshuei River sediments in northwestern Taiwan. The Jhuoshuei River sediments from western Taiwan contained clay mineral assemblages that consisted of illite (approximately 75%) and chlorite (approximately 25%), but they lacked kaolinite and smectite. In southwestern Taiwan, the clay mineral assemblages were dominated by illite (approximately 75%) and chlorite (approximately 23%), but had a low abundance of kaolinite (generally < 2%) and no smectite. The clay mineral assemblages in eastern Taiwan are obviously different from those in western parts of the island. The most noticeable difference is that the average abundance of chlorite in the Hualien River from eastern Taiwan was the highest (approximately 48%) of all the Taiwanese rivers. We concluded that, in general, the clay mineral assemblages in Taiwanese rivers were mainly composed of illite and chlorite with kaolinite and smectite being scarce, and these trends are different from those in China's mainland rivers. The clay mineral composition shown in this study was primarily determined by the properties of the bedrock, and the differential weathering intensities of the drainage area. The surface sediments in Taiwan's rivers showed a greater abundance of illite and chlorite because the outcropped rocks were mainly composed of Tertiary sedimentary rocks, especially sandstone, shale and slate, and show strong physical weathering. The relatively high relief and more abundant rainfall also caused the clay minerals in the fluvial sediments to be transported to the estuaries down rivers from the mountains and then delivered to the adjacent seas by currents and waves over a shorter time scale.

Background: Anthocyanins contribute to coloration and antioxidation effects in different plant tissues. MYB transcription factors have been demonstrated to be a key regulator for anthocyanin synthesis in many plants. However, little information was available about the MYB genes in the halophyte species Eutrema salsugineum. Result: Here we report the identification of an important anthocyanin biosynthesis regulator EsMYB90 from Eutrema salsugineum, which is a halophyte tolerant to multiple abiotic stresses. Our phylogenetic and localization analyses supported that EsMYB90 is an R2R3 type of MYB transcription factor. Ectopic expression of EsMYB90 in tobacco and Arabidopsis enhanced pigmentation and anthocyanin accumulation in various organs. The transcriptome analysis revealed that 42 genes upregulated by EsMYB90 in 35S:EsMYB90 tobacco transgenic plants are required for anthocyanin biosynthesis. Moreover, our qRT-PCR results showed that EsMYB90 promoted expression of early (PAL, CHS, and CHI) and late (DFR, ANS, and UFGT) anthocyanin biosynthesis genes in stems, leaves, and flowers of 35S:EsMYB90 tobacco transgenic plants. Conclusions: Our results indicated that EsMYB90 is a MYB transcription factor, which regulates anthocyanin biosynthesis genes to control anthocyanin biosynthesis. Our work provides a new tool to enhance anthocyanin production in various plants.

Eutrema salsugineum can grow in natural harsh environments; however, the underlying mechanisms for salt tolerance of Eutrema need to be further understood. Herein, the transcriptome profiling of Eutrema leaves and roots exposed to 300 mM NaCl is investigated, and the result emphasized the role of genes involved in lignin biosynthesis, autophagy, peroxisome, and sugar metabolism upon salt stress. Furthermore, the expression of the lignin biosynthesis and autophagy-related genes, as well as 16 random selected genes, was validated by qRT-PCR. Notably, the transcript abundance of a large number of lignin biosynthesis genes such as CCoAOMT, C4H, CCR, CAD, POD, and C3′H in leaves was markedly elevated by salt shock. And the examined lignin content in leaves and roots demonstrated salt stress led to lignin accumulation, which indicated the enhanced lignin level could be an important mechanism for Eutrema responding to salt stress. Additionally, the differentially expressed genes (DEGs) assigned in the autophagy pathway including Vac8, Atg8, and Atg4, as well as DEGs enriched in the peroxisome pathway such as EsPEX7, EsCAT, and EsSOD2, were markedly induced in leaves and/or roots. In sugar metabolism pathways, the transcript levels of most DEGs associated with the synthesis of sucrose, trehalose, raffinose, and xylose were significantly enhanced. Furthermore, the expression of various stress-related transcription factor genes including WRKY, AP2/ERF-ERF, NAC, bZIP, MYB, C2H2, and HSF was strikingly improved. Collectively, the increased expression of biosynthesis genes of lignin and soluble sugars, as well as the genes in the autophagy and peroxisome pathways, suggested that Eutrema encountering salt shock possibly possess a higher capacity to adjust osmotically and facilitate water transport and scavenge reactive oxidative species and oxidative proteins to cope with the salt environment. Thus, this study provides a new insight for exploring the salt tolerance mechanism of halophytic Eutrema and discovering new gene targets for the genetic improvement of crops.

As a high-sedimentation rate depocenter along the path of the Kuroshio Current, the southwesternmost part of the Okinawa Trough is a key area to understand the Kuroshio history and sediments transportation. A 34.17-m-long sediment core was obtained by the advanced piston corer of Marco Polo/IMAGES XII MARION DUFRESNE during the May 2005 from the Southern Okinawa Trough at site MD05-2908. The recovered sediments were analyzed by AMS 14 C dating, coarse size fraction (>63 μm) extraction and moisture content determination in order to study its sedimentation flux and provenance. The depth-age relationship of core MD05-2908 was well constrained by 17 14 C dating points. The sediments span across the mid-Holocene (6.8 ka B.P.) and have remarkablely high sedimentation rates between 1.8 and 21.2 m ka −1 , which is well consistent with the modern observations from sediment traps. We identified five 70-200 a periods of abnormally rapid sedimentation events at 6790-6600 a B.P., 5690-5600 a B.P., 4820-4720 a B.P., 1090-880 a B.P., and 260-190 a B.P., during which the highest sedimentation rate is up to 21.2 m/ka. In general, the lithology of the sediments were dominated by silt and clay, associated with less than 5% coarse size fraction (>63 μm). As the most significant sediment source, the Lanyang River in northeastern Taiwan annually deliver about 10Mt materials to the coastal and offshore region of northeast Taiwan, a portion of which could be carried northward by currents toward the study area. Therefore, we concluded that the 5 abnormally rapid sedimentation events may be related to intensified rainfall in Taiwan and thus increased materials to our study area at that time. However, a few extreme-rapid sedimentation events cannot be explained by normal river runoff alone. The large earthquakes or typhoons induced hyperpycnal discharge of fluvial sediment to the ocean may also act as a potential source supply to the Okinawa Trough.

No abstract

Lavas from back‐arc basins are generally diverse, and their geochemical compositions indicate that they received variable contributions from subduction components during petrogenesis. Obtaining comprehensive geochemistry characteristics for the entire back‐arc basin are helpful in gaining a better understanding of the complexities of back‐arc evolution. In this study, we systematically reviewed the major and trace element compositions of Lau Basin lavas. This data set covered all of the major tectonic units of the basin, for example, the Eastern Lau spreading center (ELSC), the Valu Fa ridge (VFR), the Central Lau spreading center (CLSC), the Northwestern Lau spreading center (NWLSC), the Northeastern Lau spreading center (NELSC), the Mangatolu Triple Junction (MTJ), and the Fonualei Spreading Center (FSC). The lava types from these locations are diverse, including tholeiitic basalts, alkali basalts, basaltic andesites, andesites, dacites, and rhyolites. In addition, the NELSC and FSC contain boninites. In this study, the geochemical compositions of these diverse rock types are used to investigate the spreading dynamics of the Lau Basin back‐arc. We conclude that (a) the subduction components mainly include hydrous fluids released from the subducted slab, and hydrous melt directly from the melting subducted sediment, and the influence of the subducted components on the mantle wedge and the petrogenesis of the central and southern Lau Basin lavas decreases with increasing distance from the Tonga Trench; (b) during the propagation and spreading of the Samoan mantle into the Lau Basin, lavas from the NELSC, NWLSC, MTJ, and even from the northern part of the FSC may receive variable degrees of influence from the Samoan plume; and (c) the migration of Indian MORB‐like mantle southwards into the Pacific mantle is consistent with the opening of the Lau Basin. With the gradual migration of Indian mantle into the Lau Basin, a series of spreading centers were formed, for example, in order, the NWLSC, CLSC, ELSC, and the propagating VFR.