The diurnal and vertical variability of heat and carbon dioxide (CO2) in the atmospheric surface layer are studied by analyzing measurements from a 213 m tower in Cabauw (Netherlands). Observations of thermodynamic variables and CO2 mixing ratio as well as vertical profiles of the turbulent fluxes are used to retrieve the contribution of the budget terms in the scalar conservation equation. On the basis of the daytime evolution of turbulent fluxes, we calculate the budget terms by assuming that turbulent fluxes follow a linear profile with height. This assumption is carefully tested and the deviation from linearity is quantified. The budget calculation allows us to assess the importance of advection of heat and CO2 during day hours for three selected days. It is found that, under nonadvective conditions, the diurnal variability of temperature and CO2 is well reproduced from the flux divergence measurements. Consequently, the vertical transport due to the turbulent flux plays a major role in the daytime evolution of both scalars and the advection is a relatively small contribution. During the analyzed days with a strong contribution of advection of either heat or carbon dioxide, the flux divergence is still an important contribution to the budget. For heat, the quantification of the advection contribution is in close agreement with results from a numerical model. For carbon dioxide, we qualitatively corroborate the results with a Lagrangian transport model. Our estimation of advection is compared with traditional estimations based on the Net Ecosystem‐atmosphere Exchange (NEE).

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The biosphere–atmosphere exchange of methane (CH4) was estimated for a temperate/boreal lowland and wetland forest ecosystem in northern Wisconsin for 1997–1999 using the modified Bowen ratio (MBR) method. Gradients of CH4 and CO2 and CO2 flux were measured on the 447‐m WLEF‐TV tower as part of the Chequamegon Ecosystem–Atmosphere Study (ChEAS). No systematic diurnal variability was observed in regional CH4 fluxes measured using the MBR method. In all 3 years, regional CH4 emissions reached maximum values during June–August (24±14.4 mg m−2 day−1), coinciding with periods of maximum soil temperatures. In 1997 and 1998, the onset in CH4 emission was coincident with increases in ground temperatures following the melting of the snow cover. The onset of emission in 1999 lagged 100 days behind the 1997 and 1998 onsets, and was likely related to postdrought recovery of the regional water table to typical levels. The net regional emissions were 3.0, 3.1, and 2.1 g CH4 m−2 for 1997, 1998, and 1999, respectively. Annual emissions for wetland regions within the source area (28% of the land area) were 13.2, 13.8, and 10.3 g CH4 m−2 assuming moderate rates of oxidation of CH4 in upland regions in 1997, 1998, and 1999, respectively. Scaling these measurements to the Chequamegon Ecosystem (CNNF) and comparing with average wetland emissions between 40°N and 50°N suggests that wetlands in the CNNF emit approximately 40% less than average wetlands at this latitude. Differences in mean monthly air temperatures did not affect the magnitude of CH4 emissions; however, reduced precipitation and water table levels suppressed CH4 emission during 1999, suggesting that long‐term climatic changes that reduce the water table will likely transform this landscape to a reduced source or possibly a sink for atmospheric CH4.

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