During surveys in central Florida of the zombie-ant fungus Ophiocordyceps camponoti-floridani, which manipulates the behavior of the carpenter ant Camponotus floridanus, two distinct fungal morphotypes were discovered associated with and purportedly parasitic on O. camponoti-floridani. Based on a combination of unique morphology, ecology and phylogenetic placement, we discovered that these morphotypes comprise two novel lineages of fungi. Here, we propose two new genera, Niveomyces and Torrubiellomyces, each including a single species within the families Cordycipitaceae and Ophiocordycipitaceae, respectively. We generated de novo draft genomes for both new species and performed morphological and multi-loci phylogenetic analyses. The macromorphology and incidence of both new species, Niveomyces coronatus and Torrubiellomyces zombiae, suggest that these fungi are mycoparasites since their growth is observed exclusively on O. camponoti-floridani mycelium, stalks and ascomata, causing evident degradation of their fungal hosts. This work provides a starting point for more studies into fungal interactions between mycopathogens and entomopathogens, which have the potential to contribute towards efforts to battle the global rise of plant and animal mycoses.
In recent years, drastic improvements in sequencing technologies have led to a better understanding of the specific genetic drivers of cancer. However, one of the greatest barriers to these discoveries is access to primary patient tumor tissue, especially in cancers of the Central Nervous System (CNS). In many cases tissue from surgery is processed and stored in Formalin-Fixed Paraffin-Embedded (FFPE) blocks, which sets limitations on downstream applications. In 2015, our team launched an initiative to collect and efficiently store samples from pediatric CNS tumor patients during surgeries and autopsies. Through extensive collaboration between Neuro-Oncology, Neurosurgery, Pathology, and our Translational Laboratory, we have optimized the collection process to effectively preserve sample integrity and therefore maximize their potential usage. To date, we have collected over 4,509 samples from 293 patients (636 flash-frozen tissue, 1,026 plasma & buffy coat, 748 serum, 996 whole blood, 316 Cerebrospinal Fluid (CSF), and 787 parental blood samples). In addition, we have cultured 31 primary cell lines and collected over 242 dissociated tumor specimens for implantation into patient-derived xenograft (PDX) mouse models. Through our partnership with neurosurgery and pathology, we are permitted to attend surgeries and autopsies to immediately flash-freeze tumor tissue in liquid nitrogen, typically within minutes of the tissue being removed from the body. This immediate flash-freezing process aims to ensure specimen integrity and preserve molecular profiles. From there, the tissue is either stored in our -140oC freezer for future use or sent to partnered consortiums, including the Children’s Brain Tumor Network (CBTN) and Gift from a Child. Since the optimization of the collection process, the focus has now shifted to investigating the efficacy of our storage methods by quantifying DNA/RNA integrity over time. By ensuring the successful preservation of the samples, we can maximize their impact in the pediatric neuro-oncology research field.
We report here the draft genome sequence of a novel Xenophilus species cultured from the skin of a southern leopard frog (Rana sphenocephala). Compared to previously sequenced bacterial genomes, our novel isolate showed the most significant homology with Xenophilus azovorans. The assembled genome is 3,978,285 bp, with 3,704 predicted genes and one predicted plasmid.
Fungal hyperparasites can impact ecosystem composition and disease dynamics by modulating their parasite hosts’ population size and transmission rate. Despite their perceived ecosystem impacts and potential to be applied in disease control efforts, hyperparasites are vastly understudied. In this integrative study we formally describe a new genus and two new mycoparasite species that infect the fungus Ophiocordyceps camponoti-floridani, which manipulates the behavior of Florida carpenter ants. Phylogenetic analyses demonstrate that both fungal hyperparasites are distinct species within the families Cordycipitaceae and Ophiocordycipitaceae. The unique morphology, ecology and phylogenetic placement of the Cordycipitaceae species supports its placement in a new genus, Niveomyces. Our field data alludes that both new species, Niveomyces ophiocordycipitis and Polycephalomyces oviedoensis, negatively impact O. camponoti-floridani survival and transmission. Moreover, their macromorphology, along with our field data, suggest that these hyperparasites live an exclusively mycoparasitic lifestyle and do not infect, nor decompose O. camponoti-floridani’s ant host. To find genome signatures that would further confirm their mycoparasitism, we sequenced and annotated both species’ genomes. We then compared the N. ophiocordycipitis and P. oviedoensis genomes to those of other mycoparasites, animal parasites, plant parasites, and saprophytes within the order Hypocreales and searched for previously reported mycoparasite genome signatures. However, our analyses indicate that these signatures are not greatly informative when expanding the number of genomes and lifestyles beyond those of previous studies, using the genome data that is currently available. This highlights the need for additional mycoparasite genomes within the order Hypocreales, as well as data on more closely related animal parasites. As such, this work contributes a starting point for more studies into fungal interactions between mycoparasites and entomopathogens, which have the potential to contribute important knowledge towards efforts to battle the global rise of plant and animal mycoses.
The Fibroblast Growth Factor Receptor 1 (FGFR1) gene is the second most altered gene in pediatric LGGs and has been associated with poorer prognoses. A recent study suggested a link between the FGFR1 mutation and spontaneous intracranial hemorrhage in pediatric LGG patients, an event that can be detrimental to cognitive development and, in some cases, even fatal. The current study aimed to further confirm this link by following 49 pediatric LGG patients treated at the Arnold Palmer Hospital for Children from 2007-2022 and investigating the occurrences of spontaneous intracranial hemorrhage. We accessed their treatment course, clinical outcome, radiographic findings, and pathological findings. Genetic analysis was performed as part of their standard of care at the time of tumor resection or biopsy. Of the forty-nine pediatric LGG patients we followed, eight (16.3%) experienced spontaneous intracranial hemorrhage. Five of these eight patients (62.5%) had an FGFR1 mutation. Out of the forty-nine patients, only six of them had an FGFR1 mutation, and five out of the six (83.3%) experienced spontaneous intracranial hemorrhage at some point during treatment. The one patient that did not experience hemorrhage lacked a classic FGFR1 mutation and presented with a variant of unknown significance that has yet to be regarded as pathogenic. These findings are consistent with the aforementioned study and are significant because, to date, little is known about the tumor-specific risk factors for these spontaneous intracranial hemorrhages. Understanding the risk factors could help clinicians better predict these occurrences and potentially prevent their devastating effects.
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