Due to the huge costs associated with new drug discovery and development, drug repurposing has become an important complement to the traditional de novo approach. With the increasing number of public databases and the rapid development of analytical methodologies, computational approaches have gained great momentum in the field of drug repurposing. In this study, we introduce an approach to knowledge-driven drug repurposing based on a comprehensive drug knowledge graph. We design and develop a drug knowledge graph by systematically integrating multiple drug knowledge bases. We describe path- and embedding-based data representation methods of transforming information in the drug knowledge graph into valuable inputs to allow machine learning models to predict drug repurposing candidates. The evaluation demonstrates that the knowledge-driven approach can produce high predictive results for known diabetes mellitus treatments by only using treatment information on other diseases. In addition, this approach supports exploratory investigation through the review of meta paths that connect drugs with diseases. This knowledge-driven approach is an effective drug repurposing strategy supporting large-scale prediction and the investigation of case studies.
Parkinson's disease (PD) is a chronic disease that develops over years and varies dramatically in its clinical manifestations. A preferred strategy to resolve this heterogeneity and thus enable better prognosis and targeted therapies is to segment out more homogeneous patient sub-populations. However, it is challenging to evaluate the clinical similarities among patients because of the longitudinality and temporality of their records. To address this issue, we propose a deep model that directly learns patient similarity from longitudinal and multi-modal patient records with an Recurrent Neural Network (RNN) architecture, which learns the similarity between two longitudinal patient record sequences through dynamically matching temporal patterns in patient sequences. Evaluations on real world patient records demonstrate the promising utility and efficacy of the proposed architecture in personalized predictions.
BackgroundThe number of patients with neurological diseases is currently increasing annually, which presents tremendous challenges for both patients and doctors. With the advent of advanced information technology, digital medical care is gradually changing the medical ecology. Numerous people are exploring new ways to receive a consultation, track their diseases, and receive rehabilitation training in more convenient and efficient ways. In this paper, we explore the use of facial expression recognition via artificial intelligence to diagnose a typical neurological system disease, Parkinson disease (PD).ObjectiveThis study proposes methods to diagnose PD through facial expression recognition.MethodsWe collected videos of facial expressions of people with PD and matched controls. We used relative coordinates and positional jitter to extract facial expression features (facial expression amplitude and shaking of small facial muscle groups) from the key points returned by Face++. Algorithms from traditional machine learning and advanced deep learning were utilized to diagnose PD.ResultsThe experimental results showed our models can achieve outstanding facial expression recognition ability for PD diagnosis. Applying a long short-term model neural network to the positions of the key features, precision and F1 values of 86% and 75%, respectively, can be reached. Further, utilizing a support vector machine algorithm for the facial expression amplitude features and shaking of the small facial muscle groups, an F1 value of 99% can be achieved.ConclusionsThis study contributes to the digital diagnosis of PD based on facial expression recognition. The disease diagnosis model was validated through our experiment. The results can help doctors understand the real-time dynamics of the disease and even conduct remote diagnosis.
In the article, we study the distributed model predictive control (DMPC) problem for a network of linear discrete-time systems, where the system dynamics are decoupled, the system constraints are coupled, and the communication networks are described by time-varying directed graphs. A novel distributed optimization algorithm called the push-sum dual gradient (PSDG) algorithm is proposed to solve the dual problem of the DMPC optimization problem in a fully distributed way. We prove that the sequences of the primal, and dual variables converge to their optimal values. Furthermore, to solve the implementation issues, stopping criteria are designed to allow early termination of the PSDG Algorithm, and the gossip-based push-sum algorithm is proposed to check the stopping criteria in a distributed manner. It is shown that the optimization problem is iteratively feasible, and the closed-loop system is exponentially stable. Finally, the effectiveness of the proposed DMPC approach is verified via an example.Index Terms-Distributed model predictive control (DMPC), global constraints, gossip-based push-sum algorithm, push-sum dual gradient (PSDG) algorithm, time-varying directed graphs.
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