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The small cactus Mammillaria fraileana is a pioneer rock-colonizing plant harboring endophytic bacteria with the potential for nitrogen fixation and rock weathering (phosphate solubilization and rock degradation). In seeds, only a combination of culture-independent methods, such as fluorescence in situ hybridization, scanning electron microscopy, and fluorescence vital staining, detected significant amounts of non-culturable, but living, endophytic bacteria distributed underneath the membrane covering the embryo, in the undifferentiated tissue of the embryo, and in the vascular tissue. Large populations of culturable endophytic bacteria were detected in stems and roots of wild plants colonizing rocks in the southern Sonoran Desert, but not in seeds. Among 14 endophytic bacterial isolates found in roots, four isolates were identified by full sequencing of their 16S rRNA gene. In vitro tests indicated that Azotobacter vinelandii M2Per is a potent nitrogen fixer. Solubilization of inorganic phosphate was exhibited by Pseudomonas putida M5TSA, Enterobacter sakazakii M2PFe, and Bacillus megaterium M1PCa, while A. vinelandii M2Per, P. putida M5TSA, and B. megaterium M1PCa weathered rock by reducing the size of rock particles, probably by changing the pH of the liquid media. Cultivated seedlings of M. fraileana, derived from disinfected seeds and inoculated with endophytic bacteria, showed re-colonization 105 days after inoculation. Their densities decreased from the root toward the stem and apical zones. Functional traits in planta of culturable and non-culturable endophytic bacteria in seeds remain unknown.

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Soil degradation is an ecological disturbance, usually human‐caused, that negatively affects the vegetation and climate of an ecosystem, particularly arid and semiarid environments. These degraded soils can be restored by using native perennial plants inoculated with specific microorganisms. We studied the changes in root growth and the rhizosphere bacterial community of mesquite seedlings (Prosopis articulata) after inoculation with the endophytic bacteria Bacillus pumilus ES4, over 3 cycles of growth in the same soil under desert climatic conditions, and found that inoculation significantly enhanced root biomass during the growth cycles but not shoot biomass or root and shoot lengths. Fluorescent in situ hybridization analysis demonstrated that B. pumilus colonized the root cap, apical meristem, and elongation zone, forming small colonies, on roots from soil‐grown mesquite. Inoculation also significantly changed the bacterial community structure of rhizophere and nonrhizosphere (without plants) soils based on denaturing gradient gel electrophoresis profiles. The changes were highly stable, and the bacterial community structure was maintained throughout the experimental period and not affected by plant replacement. The 16S rRNA pyrosequencing confirmed the changes on structure of bacterial community and revealed an impact on the top taxonomic levels analyzed. The rhizospheres of inoculated plants showed a significant increase in the abundance of Proteobacteria and Acidobacteria coupled with a concomitant decrease in Actinobacteria, whereas an opposite response was observed in nonrhizospheric degraded soils. Overall, inoculation with B. pumilus reduced bacterial diversity but increased the Rhizobium population in the soil. The class Bacilli, despite B. pumilus inoculum, showed minimal variation.

Premise of research. Biotic interactions have long been considered to be of less importance in structuring desert systems than other ecosystem types, but biotic interactions often play a critical role in meeting the challenges posed by the extreme conditions of desert environments. The Sonoran Desert, in particular, is home to several textbook examples of mutualisms, such as the interactions between the iconic saguaro cactus and its bat pollinators. But what do we know about the diversity, ecology, and evolution of plant-animal, plant-plant, and plant-microbe interactions and their impacts on individual plants and plant species in the Sonoran Desert? Methodology. To address this question, we review the published research on seven common kinds of plant biotic interactions by revisiting the respective literature, identifying gaps in our knowledge, and outlining future research directions. Pivotal results. Numerous gaps in our knowledge of plant biotic interactions in the Sonoran Desert were identified. Studies of insect herbivory, bee pollination, and plant-microbe interactions are poorly represented in the Sonoran Desert literature. Across all categories of interaction, few have examined the impacts of interactions on plant fitness or context-dependent variation in the outcomes and strengths of interactions. For the most part, interactions have been studied at single locations and over short periods of time, resulting in an incomplete understanding of their diversity, ecology, and evolution. Conclusions. Plant biotic interactions shape the habitats in which they occur and play an important role in the maintenance of species diversity. Therefore, we call for increased efforts to fill the gaps in our understanding of plant biotic interactions in the Sonoran Desert, with an emphasis on studies linking interactions to plant fitness and the context-dependent nature of interactions. Without this knowledge we have limited capacity to predict the outcomes of global change on species interactions and to develop measures to conserve the biodiversity of the Sonoran Desert region.

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