The ability to predict patient-specific soft tissue deformations is key for computer-integrated surgery systems and the core enabling technology for a new era of personalized medicine. Element-Free Galerkin (EFG) methods are better suited for solving soft tissue deformation problems than the finite element method (FEM) due to their capability of handling large deformation while also eliminating the necessity of creating a complex predefined mesh. Nevertheless, meshless methods based on EFG formulation, exhibit three major limitations: i) meshless shape functions using higher order basis cannot always be computed for arbitrarily distributed nodes (irregular node placement is crucial for facilitating automated discretization of complex geometries); ii) imposition of the Essential Boundary Conditions (EBC) is not straightforward; and, iii) numerical (Gauss) integration in space is not exact as meshless shape functions are not polynomial. This paper presents a suite of Meshless Total Lagrangian Explicit Dynamics (MTLED) algorithms incorporating a Modified Moving Least Squares (MMLS) method for interpolating scattered data both for visualization and for numerical computations of soft tissue deformation, a novel way of imposing EBC for explicit time integration, and an adaptive numerical integration procedure within the Meshless Total Lagrangian Explicit Dynamics algorithm. The appropriateness and effectiveness of the proposed methods is demonstrated using comparisons with the established non-linear procedures from commercial finite element software ABAQUS and experiments with very large deformations. To demonstrate the translational benefits of MTLED we also present a realistic brain-shift computation.

We present a strong form, meshless point collocation explicit solver for the numerical solution of the transient, incompressible, viscous Navier-Stokes (N-S) equations in two dimensions. We numerically solve the governing flow equations in their stream function-vorticity formulation. We use a uniform Cartesian embedded grid to represent the flow domain. We compute the spatial derivatives using the Meshless Point Collocation (MPC) method. We verify the accuracy of the numerical scheme for commonly-used benchmark problems including lid-driven cavity flow, flow over a backward-facing step and vortex shedding behind a cylinder. We have examined the applicability of the proposed scheme by considering flow cases with complex geometries, such as flow in a duct with cylindrical obstacles, flow in a bifurcated geometry, and flow past complex-shaped obstacles. Our method offers high accuracy and excellent computational efficiency as demonstrated by the verification examples, while maintaining a stable time step comparable to that used in unconditionally stable implicit methods.

Tumour resection requires precise planning and navigation to maximise tumour removal while simultaneously protecting nearby healthy tissues. Neurosurgeons need to know the location of the remaining tumour after partial tumour removal before continuing with the resection. Our approach to the problem uses biomechanical modelling and computer simulation to compute the brain deformations after the tumour is resected. In this study, we use meshless Total Lagrangian explicit dynamics as the solver. The problem geometry is extracted from the patient-specific magnetic resonance imaging (MRI) data and includes the parenchyma, tumour, cerebrospinal fluid and skull. The appropriate non-linear material formulation is used. Loading is performed by imposing intra-operative conditions of gravity and reaction forces between the tumour and surrounding healthy parenchyma tissues. A finite frictionless sliding contact is enforced between the skull (rigid) and parenchyma. The meshless simulation results are compared to intra-operative MRI sections. We also calculate Hausdorff distances between the computed deformed surfaces (ventricles and tumour cavities) and surfaces observed intra-operatively. Over 80% of points on the ventricle surface and 95% of points on the tumour cavity surface were successfully registered (results within the limits of two times the original in-plane resolution of the intra-operative image). Computed results demonstrate the potential for our method in estimating the tissue deformation and tumour boundary during the resection.

In this study we present a kinematic approach for modeling needle insertion into soft tissues. The kinematic approach allows the presentation of the problem as Dirichlet-type (i.e. driven by enforced motion of boundaries) and therefore weakly sensitive to unknown properties of the tissues and needle-tissue interaction. The parameters used in the kinematic approach are straightforward to determine from images. Our method uses Meshless Total Lagrangian Explicit Dynamics (MTLED) method to compute soft tissue deformations. The proposed scheme was validated against experiments of needle insertion into silicone gel samples. We also present a simulation of needle insertion into the brain demonstrating the method’s insensitivity to assumed mechanical properties of tissue.

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We present an efficient and accurate immersed boundary (IB) finite element (FE) solver for numerically solving incompressible Navier-Stokes equations. Particular emphasis is given to internal flows with complex geometries (blood flow in the vasculature system). IB methods are computationally costly for internal flows, mainly due to the large percentage of grid points that lie outside the flow domain. In this study, we apply a local refinement strategy, along with a domain reduction approach in order to reduce the grid that covers the flow domain and increase the percentage of the grid nodes that fall inside the flow domain. The proposed method utilizes an efficient and accurate FE solver with the incremental pressure correction scheme (IPCS), along with the boundary condition enforced IB method to numerically solve the transient, incompressible Navier-Stokes flow equations. We verify the accuracy of the numerical method using the analytical solution for Poiseuille flow in a cylinder. We further examine the accuracy and applicability of the proposed method by considering flow within complex geometries, such as blood flow in aneurysmal vessels and the aorta, flow configurations which would otherwise be extremely difficult to solve by most IB methods. Our method offers high accuracy, as demonstrated by the verification examples, and high efficiency, as demonstrated through the solution of blood flow within complex geometry on an off-the-shelf laptop computer.

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