Wide hybrids have been used in generating genetic maps of many plant species. In this study, genetic and physical mapping was performed on ph1b-induced recombinants of rye chromosome 2R in wheat (Triticum aestivum L.). All recombinants were single breakpoint translocations. Recombination 2RS-2BS was absent from the terminal and the pericentric regions and was distributed randomly along an intercalary segment covering approximately 65% of the arm's length. Such a distribution probably resulted from structural differences at the telomeres of 2RS and wheat 2BS arm that disrupted telomeric initiation of pairing. Recombination 2RL-2BL was confined to the terminal 25% of the arm's length. A genetic map of homoeologous recombination 2R-2B was generated using relative recombination frequencies and aligned with maps of chromosomes 2B and 2R based on homologous recombination. The alignment of the short arms showed a shift of homoeologous recombination toward the centromere. On the long arms, the distribution of homoeologous recombination was the same as that of homologous recombination in the distal halves of the maps, but the absence of multiple crossovers in homoeologous recombination eliminated the proximal half of the map. The results confirm that homoeologous recombination in wheat is based on single exchanges per arm, indicate that the distribution of these single homoeologous exchanges is similar to the distribution of the first (distal) crossovers in homologues, and suggest that successive crossovers in an arm generate specific portions of genetic maps. A difference in the distribution of recombination between the short and long arms indicates that the distal crossover localization in wheat is not dictated by a restricted distribution of DNA sequences capable of recombination but by the pattern of pairing initiation, and that can be affected by structural differences. Restriction of homoeologous recombination to single crossovers in the distal part of the genetic map complicates chromosome engineering efforts targeting genes in the proximal map regions.

In situ hybridization with total genomic DNA (GISH) has become a powerful tool in characterization of alien introgressions in wheat. With recent simplification it can now be used in large scale screening for new chromosome constructs. Its level of resolution in routine applications was tested on sets of recombined wheat-rye chromosomes with genetically determined positions of the translocation breakpoints. The resolution level of GISH visualized by an enzymatic color reaction was much lower than that of GISH with fluorescent probes but both techniques failed to reveal the presence of some distally located breakpoints. The limits of resolution for the two methods were at least 9.8 and 3.5 cM of the relative genetic lengths of chromosome arms, respectively, in configurations with proximal rye and terminal wheat segments when rye DNA was used as a probe. When wheat DNA was used as a probe, a terminal wheat segment estimated to be ca. 1.6 cM in length could not be visualized. An example of induced recombination between a chromosome of Agropyron elongatum and wheat illustrates that these resolution limits of GISH may hamper isolation of critical translocation breakpoints in a chromosome engineering effort.

The assessment of diversity and population structure and construction of a core collection is beneficial for the efficient use and management of germplasm. A unique collection of common oat landraces, cultivated in the temperate climate of central Europe until the end of the twentieth century, is preserved in the Polish gene bank. It consists of 91 accessions that have never been used in breeding programs. In order to optimise the use of this genetic resource, we aimed to: (1) determine genetic and agro-morphological diversity, (2) identify internal genetic variation of the tested accessions, (3) form a core collection and (4) recognise the accessions useful for breeding programs or re-release for cultivation. The collection was screened using ISSR markers (1520 loci) and eight agro-morphological traits. Uniquely, we performed molecular studies based on 24 individuals of every accession instead of bulk samples. Therefore, assessment of the degree of diversity within each population and the identification of overlapping gene pools were possible. The observed internal diversity (Nei unbiased coefficient) was in the range of 0.17–0.31. Based on combined genetic and agro-morphological data, we established the core collection composed of 21 landraces. Due to valuable compositions of important traits, some accessions were also identified as useful for breeding programs. The population structure and principal coordinate analysis revealed two major clusters. Based on the previous results, the accessions classified within the smaller one were identified as obsolete varieties instead of landraces. Our results show that the oat landraces are, in general, resistant to local races of diseases, well adapted to local conditions and, in some cases, yielding at the level of modern varieties. Therefore, in situ conservation of the landraces in the near future may be satisfactory for both farmers and researchers in terms of the genetic resources preservation.

The Russian wheat aphid (Diuraphis noxia Mordvilko) is a serious pest of wheat (Triticum aestivum L.). To extend the range of genetic variation of resistance, attempts were undertaken to transfer near‐immunity to RWA into wheat from two Russian triticales (X. Triticosecale Wittmack) PI 386146 and PI 386156 by irradiation and by induced homologous recombination. The rye genome in the triticale lines was derived from Secale montanum Guss. Tests of resistance in early backcrosses to wheat indicated that the near‐immunity of the triticale lines was controlled by at least two loci, one of which was located on rye chromosome arm 4RLmon Centric wheat‐rye translocation 7DS.4RLmon that appeared to be compensating, was produced. To further reduce the amount of rye chromatin present, its long arm was induced to recombine with wheat chromosomes by the removal of the Ph1 locus. Among 3563 progeny screened, only two wheat‐rye recombinant chromosomes were recovered. Both appeared to be non‐compensating and were involved in multivalents in meiosis. Irradiation of PI 386156 followed by crosses and backcrosses to wheat with several generations of selection for resistance resulted in a wheat line that was found to be a disomic addition of chromosome 4Rmon–centric translocation homozygote of rye chromosome tentatively identified as 5Rmon With only one locus for resistance from the original triticale parents, the addition line of 4Rmon, centric translocation line 7DS.4RLmon and recombinant lines of 4RLmon had only moderate level of resistance to RWA. The study demonstrates that transfers of alien variation into wheat may be severely complicated by unclear genetics of the target traits, low levels of homology, and structural differences between the donor and recipient chromosomes.

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Rye is one of the most commonly used sources of elite genes in wheat improvement programs. Due to the high collinearity of the genomes of both cereal species, it is possible to obtain interspecific chromosomal translocations and substitution lines. Rye chromatin is used to transfer numerous genes for resistance to biotic and abiotic stresses into the wheat genome. Introgression has also resulted in improved agronomic traits. However, despite the numerous advantages, the transfer of large fragments or whole chromosomes has been quite often accompanied by a decrease in end-use quality. This paper presents an overview of the benefits and drawbacks of using rye as a source of variability in wheat breeding.

Two sets of disomic substitution lines, derived from the cultivars ÔPrestoÕ and ÔRhinoÕ of triticale, with rye chromosome pairs replaced by their wheat D-genome homoeologues, were tested in hydroponic culture for nitrogen and phosphorus uptake and utilization efficiency. The effect of a substitution on the amount of absorbed nutrients was predominantly negative and proportional to the effect on plant dry matter. Significant decreases were found for the substitutions 5D(5R), 6D(6R) of both cultivars, 2D(2R), 4D(4R) of ÔPrestoÕ and 3D(3R) of ÔRhinoÕ. On the other hand, the nitrogen utilization efficiency was significantly increased in all substitution lines, with the exception of the 1D(1R) ones. The differences in phosphorus utilization were generally positive, but less pronounced, and significant only in the lines 2D(2R) and 6D(6R). The data suggest that presence of both rye and D-genome chromosomes is conducive for the best effect of the applied N and P fertilizers.

Background Sand oat ( Avena strigosa Schreb.), one of the four cultivated species of the genus Avena, could be considered as another alternative crop. In gene banks 865 germplasm samples of this species have been preserved that have not been thoroughly investigated so far. The results of phenotyping (36 traits), isoenzymatic (12 systems) and genetic (8 pairs of Sequence-related amplified polymorphism markers) variation were used to obtain the complete description of 56 accessions diversity originated from different parts of world. Results Breeded and weedy forms represented similar pool of morphological traits that indicated a short-term and extensive breeding process, albeit all accessions which we classified as cultivated were characterized by better grain and green mass parameters compared to the weedy ones. Isoenzymes showed relationships with geographical origin, which was not possible to detect by SRAP markers. There was no similarity between morphological and biochemical results. The polymorphism level of SRAP markers was lower than indicated by the available literature data for other species, however it may result from the analysis of pooled samples of accessions with a high internal variability. The extensive type of breeding and its relatively short duration was also reflected in the population structure results. Joint analysis revealed that a secondary centre of diversity is being created in South America and that it has its genealogy from the Iberian Peninsula. Conclusions Despite the relatively large representation of this species is in various gene banks, it is highly probable that the vast majority of stored worldwide accessions are duplicates, and the protected gene pool is relatively narrow. Sand oat meets all the requirements for an alternative crop species, but further studies are needed to identify the genotypes/populations with the most favourable distribution of utility and quality parameters.