The leaf-colonizing bacterial microbiota was studied in a long-term warming experiment on a permanent grassland, which had been continuously exposed to increased surface temperature (+2°C) for more than six years. Two abundant plant species, Arrhenatherum elatius and Galium album, were studied. Surface warming reduced stomata opening and changed leaf metabolite profiles. Leaf surface colonization and the concentration of leaf-associated bacterial cells were not affected. However, bacterial 16S ribosomal RNA (rRNA) gene amplicon Illumina sequencing showed significant temperature effects on the plant species-specific phyllosphere microbiota. Warming partially affected the concentrations of cultured bacteria and had a significant effect on the composition of most abundant cultured plant species-specific bacteria. The abundance of Sphingomonas was significantly reduced. Sphingomonas isolates from warmed plots represented different phylotypes, had different physiological traits and were better adapted to higher temperatures. Among Methylobacterium isolates, a novel phylotype with a specific mxaFtype was cultured from plants of warmed plots while the most abundant phylotype cultured from control plots was strongly reduced. This study clearly showed a correlation of long-term surface warming with changes in the plant physiology and the development of a physiologically and genetically adapted phyllosphere microbiota.

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GHGemissions are usually the result of several simultaneous processes. Furthermore, some gases such as N2 are very difficult to quantify and require special techniques. Therefore, in this chapter, the focus is on stable isotopemethods. Both natural abundance techniques and enrichment techniques are used. Especially in the last decade, a number of methodological advances have been made. Thus, this chapter provides an overview and description of a number of current state-of-the-art techniques, especially techniques using the stable isotope15N. Basic principles and recent advances of the 15N gasflux method are presented to quantify N2 fluxes, but also the latest isotopologue and isotopomermethods to identify pathways for N2O production. The second part of the chapter is devoted to 15N tracing techniques, the theoretical background and recent methodological advances. A range of different methods is presented from analytical to numerical tools to identify and quantify pathway-specific N2O emissions. While this chapter is chiefly concerned with gaseous N emissions, a lot of the techniques can also be applied to other gases such as methane (CH4), as outlined in Sect. 10.1007/978-3-030-55396-8_5#Sec12.

An increase in mean soil surface temperature has been observed over the last century, and it is predicted to further increase in the future. The effect of increased temperature on ecosystem carbon fluxes in a permanent temperate grassland was studied in a long‐term (6 years) field experiment, using multiple temperature increments induced by IR lamps. Ecosystem respiration (R‐eco) and net ecosystem exchange (NEE) were measured and modeled by a modified Lloyd and Taylor model including a soil moisture component for R‐eco (average R 2 of 0.78) and inclusion of a photosynthetic component based on temperature and radiation for NEE (R 2 = 0.65). Modeled NEE values ranged between 2.3 and 5.3 kg CO 2 m−2 year−1, depending on treatment. An increase of 2 or 3°C led to increased carbon losses, lowering the carbon storage potential by around 4 tonnes of C ha−1 year−1. The majority of significant NEE differences were found during night‐time compared to daytime. This suggests that during daytime the increased respiration could be offset by an increase in photosynthetic uptake. This was also supported by differences in δ 13C and δ 18O, indicating prolonged increased photosynthetic activity associated with the higher temperature treatments. However, this increase in photosynthesis was insufficient to counteract the 24 h increase in respiration, explaining the higher CO 2 emissions due to elevated temperature.

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Background and aims Within the last decades, consid-

Nitrite (NO2−) is a crucial compound in the N soil cycle. As an intermediate of nearly all N transformations, its isotopic signature may provide precious information on the active pathways and processes. NO2− analyses have already been applied in 15N tracing studies, increasing their interpretation perspectives. Natural abundance NO2− isotope studies in soils were so far not applied and this study aims at testing if such analyses are useful in tracing the soil N cycle. We conducted laboratory soil incubations with parallel natural abundance and 15N treatments, accompanied by isotopic analyses of soil N compounds (NO3−, NO2−, NH4+). The double 15N tracing method was used as a reference method for estimations of N transformation processes based on natural abundance nitrite dynamics. We obtained a very good agreement between the results from nitrite isotope model proposed here and the 15N tracing approach. Natural abundance nitrite isotope studies are a promising tool to our understanding of soil N cycling.

Several approaches exist for measuring greenhouse gases (GHGs), mainly CO2, N2O, and CH4, from soil surfaces. The principle methods that are used to measure GHG from agricultural sites are chamber-based techniques. Both open and closed chamber techniques are in use; however, the majority of field applications use closed chambers. The advantages and disadvantages of different chamber techniques and the principal steps of operation are described. An important part of determining the quality of the flux measurements is the storage and the transportation of the gas samples from the field to the laboratory where the analyses are carried out. Traditionally, analyses of GHGs are carried out via gas chromatographs (GCs). In recent years, optical analysers are becoming increasingly available; these are user-friendly machines and they provide a cost-effective alternative to GCs. Another technique which is still under development, but provides a potentially superior method, is Raman spectroscopy. Not only the GHGs, but also N2, can potentially be analysed if the precision of these techniques is increased in future development. An important part of this chapter deals with the analyses of the gas concentrations, the calculation of fluxes, and the required safety measures. Since non-upland agricultural lands (i.e. flooded paddy soils) are steadily increasing, a section is devoted to the specificities of GHG measurements in these ecosystems. Specialised techniques are also required for GHG measurements in aquatic systems (i.e. rivers), which are often affected by the transfer of nutrients from agricultural fields and therefore are an important indirect source of emission of GHGs. A simple, robust, and more precise methodof ammonia (NH3) emission measurement is also described.