Internal energies and energy distributions were studied using the 'survival yield' method developed previously. In addition to conventional benzylpyridinium salts, protonated esters (fragmenting by rearrangement) and protonated leucine enkephalin were also used, extending the validity of the technique. Fragmentation processes were studied in the cone voltage region and modeled by the RRKM-based MassKinetics program. The results show that the shapes of the energy distributions are similar to thermal distributions. The mean internal energies are very similar for all compound classes studied, and show a linear increase with collision energy in the 10-50 eV region.

The yield of metallation of methionine-enkephalin and leucine-enkephalin isomers by copper(II) chloride was investigated by electrospray ionization ion trap mass spectrometry (ESI-ITMS) in negative ionization mode. Binary ([(M-3H)+Cu(II)](-)) and ternary ([(M-3H)+Cu(II)Cl](-)) complexes were observed. Soft and hard desolvation conditions (by changing the declustering voltage) were applied to study their influence on the metallation yield and on the observed deprotonated and metallated species. Structures of the binary complexes with defined charge locations are proposed, based on the observed in-source fragmentations. It was demonstrated that the in-source fragmentations under hard desolvation conditions could differentiate the Leu/Ile isomers if located at the C-terminal position but not at the N-terminal position. This behavior was also observed using a triple quadrupole analyzer. This facile distinction, due to a different radical loss from the [(M-3Hbond;CO(2))+Cu(II)](-) species (loss of [C(3)H(7)](.) for YGGFL and [C(2)H(5)](.) for YGGFI), was facilitated by the reduction of the oxidation state of Cu(II). This in-source differentiation of YGGFI and YGGFL was also implemented in LC/ESI-MS analysis by post-column addition of the copper salt with a syringe pump.

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Preconcentration of nerve agent degradation products (alkyl methylphosphonic acids) contained in high-conductivity matrices was performed using transient ITP to enhance sensitivity of CE-ESI-MS. The separation conditions of the five studied alkyl methylphosphonic acids in CE-MS were first optimized. The presence of methanol in the separation medium was required to obtain a good separation of the analytes under counter-EOF conditions. Preconcentration by ITP was induced by the BGE acting as leading electrolyte (LE) while the terminating electrolyte (TE) was loaded before the sample because of the counter-EOF conditions. Different leading ions (formate or acetate) and LE concentrations were tested. The best results for the analysis of soil extracts fortified with the analytes were obtained with an LE composed of 30 mM CH(3)COONH(4) adjusted to pH 8.8 with ammonium hydroxide in (35:65 v/v) MeOH/H(2)O mixture. The TE consisted of 200 mM glycine adjusted to pH 10.0 with ammonium hydroxide in the same solvent mixture. The loading length of the TE zone was optimized. The initial pH of the TE, which determined the initial mobility of the terminating ion, appeared to markedly influence the resolution and the sensitivity. This transient ITP-CZE-MS method was then adapted for the analysis of rat urine samples fortified with the analytes, which required the use of a more concentrated LE (50 mM). LODs between 4 and 70 ng/mL in soil extract, and between 5 and 75 ng/mL in rat urine were reached from extracted ion electropherograms.

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