Thaumarchaeotal nitrifiers are among the most abundant organisms in the ocean, but still unknown is the carbon (C) yield from nitrification and the coupling of these fluxes to phosphorus (P) turnover and release of metabolites from the cell. Using a dual radiotracer approach, we found that Nitrosopumilus maritimus fixed roughly 0.3 mol C, assimilated 2 mmol P, and released ca. 10−2 mol C and 10−5 mol P as dissolved organics (DOC and DOP) per mole ammonia respired. Phosphate turnover may influence assimilation fluxes by nitrifiers in the euphotic zone, which parallel those of the dark ocean. Collectively, marine nitrifiers assimilate up to 2 Pg C year−1 and 0.05 Pg P year−1 and thereby recycle roughly 5% of mineralized C and P into marine biomass. Release of roughly 50 Tg DOC and 0.2 Tg DOP by thaumarchaea each year represents a small but fresh input of reduced substrates throughout the ocean.
Microbial biomass is a key parameter needed for the quantification of microbial turnover rates and their contribution to the biogeochemical element cycles. However, estimates of microbial biomass rely on empirically derived mass-to-volume relationships, and large discrepancies exist between the available empirical conversion factors. Here we report a significant nonlinear relationship between carbon mass and cell volume (mcarbon=197×V0.46; R2=0.95) based on direct cell mass, volume, and elemental composition measurements of 12 prokaryotic species with average volumes between 0.011 and 0.705 μm3. The carbon mass density of our measured cells ranged from 250 to 1,800 fg of C μm−3 for the measured cell volumes. Compared to other currently used models, our relationship yielded up to 300% higher carbon mass values. A compilation of our and previously published data showed that cells with larger volumes (>0.5 μm3) display a constant (carbon) mass-to-volume ratio, whereas cells with volumes below 0.5 μm3 exhibit a nonlinear increase in (carbon) mass density with decreasing volume. Small microorganisms dominate marine and freshwater bacterioplankton as well as soils and marine and terrestrial subsurface. The application of our experimentally determined conversion factors will help to quantify the true contribution of these microorganisms to ecosystem functions and global microbial biomass. IMPORTANCE Microorganisms are a major component of Earth’s biosphere, and their activity significantly affects the biogeochemical cycling of bioavailable elements. To correctly determine the flux of carbon and energy in the environment, reliable estimates of microbial abundances and cellular carbon content are necessary. However, accurate assessments of cellular carbon content and dry weight are not trivial to obtain. Here we report direct measurements of cell dry and carbon mass of environmentally relevant prokaryotic microorganisms using a microfluidic mass sensor. We show a significant nonlinear relationship between carbon mass and cell volume and discuss this relationship in the light of currently used cellular mass models.
A variety of differently structured PEG‐based polymers can form physically cross‐linked PEG hydrogels with α‐cyclodextrin. The polymer structures strongly influence the properties of the hydrogel and its formation. Four different copolymers of methoxy PEG methacrylate and methacrylic acid are used together with α‐cyclodextrin to study hydrogel formation speed and gel strength. The hydrogels are formed within 1–25 min, and the formation process is examined in situ by dynamic light scattering. The gel formation time is pH dependent due to the methacrylic acid present in the polymers. The gel strength examined by texture analyzer also depends on the composition and pH. With prior mechanical destruction, all hydrogels are dissolvable in an excess of water, being a useful feature for an in vivo usage. By analyzing the structures of the hydrogels with confocal light microscopy (laser scanning confocal microscopy) and scanning electron microscope (SEM) after freeze etching, the different hydrogel structures can be observed.
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Plastics are pervasive in marine ecosystems including at the depths of our oceans. Microfibers, amongst other microscopic plastics, accumulate in deep sea sediments at concentrations up to four orders of magnitude higher than in surface waters. This is at odds with the fact that most microfibers are positively buoyant, and it is hypothesized that settling aggregates are vectors for downward transport of microfibers in the ocean. In laboratory incubations using roller tanks, we formed diatom aggregates with differing concentrations of microfibers and observed that microfiber addition stimulated aggregate formation, but decreased structural cohesion and caused them to break apart more readily, resulting in smaller average sizes. Incorporation of positively buoyant microfibers into settling aggregates reduced their size-specific sinking velocities proportional to the microfiber concentration. Slower sinking extends aggregate retention time in the upper ocean, thereby increasing the time available for organic matter remineralization in the upper water column. Here, we show that microfiber concentrations typical of those in the English Channel and Atlantic Ocean decrease potential export flux by 15-50%. Present day microfiber concentrations in surface waters may therefore be substantially reducing the efficiency of the biological carbon pump relative to the pre-plastic era.
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