Solanum ×  michoacanum (Bitter.) Rydb. is a diploid, 1 EBN (Endosperm Balance Number) nothospecies, a relative of potato originating from the area of Morelia in Michoacán State of Mexico that is believed to be a natural hybrid of S. bulbocastanum × S. pinnatisectum. Both parental species and S. michoacanum have been described as sources of resistance to Phytophthora infestans (Mont.) de Bary. The gene for resistance to potato late blight, Rpi-mch1, originating from S. michoacanum was mapped to the chromosome VII of the potato genome. It confers high level of resistance since the plants possessing it showed only small necrotic lesions or no symptoms of the P. infestans infection and we could ascribe over 80% of variance observed in the late blight resistance test of the mapping population to the effect of the closest marker. Its localization on chromosome VII may correspond to the localization of the Rpi1 gene from S. pinnatisectum. When mapping Rpi-mch1, one of the first genetic maps made of 798 Diversity Array Technology (DArT) markers of a plant species from the Solanum genus and the first map of S. michoacanum, a 1EBN potato species was constructed. Particular chromosomes were identified using 48 sequence-specific PCR markers, originating mostly from the Tomato-EXPEN 2000 linkage map (SGN), but also from other sources. Recently, the first DArT linkage map of 2 EBN species Solanumphureja has been published and it shares 197 DArT markers with map obtained in this study, 88% of which are in the concordant positions.Electronic supplementary materialThe online version of this article (doi:10.1007/s00122-011-1715-4) contains supplementary material, which is available to authorized users.

A diploid, potato mapping population consisting of 149 individuals was assessed in three consecutive years for important agronomic and quality traits: tuber shape, regularity of tuber shape, eye depth, mean tuber weight, and tuber flesh color. Analysis of variance showed that the genotype had the largest influence on the phenotypic scores but effect of the genotype × year interactions was also strong. Using this data and an existing genetic map, a quantitative trait loci (QTL) analysis was conducted. From four to seven QTL were detected for each trait except tuber flesh color, which was determined by a major QTL on chromosome III explaining 76.8% of the trait variance. Additionally, a minor QTL for flesh color was localized on chromosome II. For the other traits, significant QTL were detected: for tuber shape on chromosome X, for regularity of tuber shape on chromosome III, for eye depth on chromosome IV, and for tuber weight on chromosome I. Some detected QTL confirmed previous studies, but new ones were also identified.Electronic supplementary materialThe online version of this article (10.1007/s13353-018-0433-x) contains supplementary material, which is available to authorized users.

BackgroundPhytophthora infestans (Mont.) de Bary, the causal organism of late blight, is economically the most important pathogen of potato and resistance against it has been one of the primary goals of potato breeding. Some potentially durable, broad-spectrum resistance genes against this disease have been described recently. However, to obtain durable resistance in potato cultivars more genes are needed to be identified to realize strategies such as gene pyramiding or use of genotype mixtures based on diverse genes.ResultsA major resistance gene, Rpi-rzc1, against P. infestans originating from Solanum ruiz-ceballosii was mapped to potato chromosome X using Diversity Array Technology (DArT) and sequence-specific PCR markers. The gene provided high level of resistance in both detached leaflet and tuber slice tests. It was linked, at a distance of 3.4 cM, to violet flower colour most likely controlled by the previously described F locus. The marker-trait association with the closest marker, violet flower colour, explained 87.1% and 85.7% of variance, respectively, for mean detached leaflet and tuber slice resistance. A genetic linkage map that consisted of 1,603 DArT markers and 48 reference sequence-specific PCR markers of known chromosomal localization with a total map length of 1204.8 cM was constructed.ConclusionsThe Rpi-rzc1 gene described here can be used for breeding potatoes resistant to P. infestans and the breeding process can be expedited using the molecular markers and the phenotypic marker, violet flower colour, identified in this study. Knowledge of the chromosomal localization of Rpi-rzc1 can be useful for design of gene pyramids. The genetic linkage map constructed in this study contained 1,149 newly mapped DArT markers and will be a valuable resource for future mapping projects using this technology in the Solanum genus.

Tuber tissue discolorations caused by impact (blackspot bruising) and enzymatic discoloration (ED) after tuber cutting are crucial quality traits of the cultivated potato. To understand the complex genetics of the traits, quantitative trait locus (QTL) analysis using diploid mapping population and diversity array technology (DArT) markers was performed. The phenotypic assessment included the complex evaluation of blackspot bruising susceptibility through two methods: rotating drum (B RD) and falling bolt (B FB) in combination with the evaluation of enzymatic discoloration. Because of observed in-practice relationship between bruising susceptibility and tuber starch content (TSC), analysis of starch content-corrected bruising susceptibility (SCB) was performed. QTLs for bruising were detected on chromosomes I, V with both test methods. The rotating drum method enabled the detection of additional QTLs on chromosomes VIII and XII. Analysis of SCB enabled the identification of the major QTL on chromosome V and two weaker QTLs on chromosomes VIII and XII, independently of starch content. The QTL for bruising detected on chromosome I overlapped with the most significant QTL for tuber starch content. This QTL was not significant for starch content-corrected bruising susceptibility, and the effect of the QTL on chromosome V was enhanced for this trait. The QTL analysis of ED revealed the contribution of seven QTLs for the trait, located on six chromosomes, including these detected for the first time: a major locus on chromosome V and minor QTLs on chromosomes VII and X, which were specific for the trait. The QTL for ED on chromosome VIII was co-localized with the marker for polyphenol oxidase (POT32). The phenotypic correlation between bruising and ED was confirmed in QTL analyses of both traits, and the QTLs detected for these traits overlapped on chromosomes I, V, and VIII. Our results should provide a basis for further studies on candidate genes affecting blackspot bruise susceptibility and enzymatic discoloration.Electronic supplementary materialThe online version of this article (doi:10.1007/s00438-017-1387-0) contains supplementary material, which is available to authorized users.

Resistance to bruising is an important quality trait of potato depending on multiple genetic and environmental factors. Thirty one interspecific diploid hybrids and two tetraploid standards were evaluated for resistance to bruising in 2 years. Diploids originated from crosses between wild and primitive Solanum species and dihaploids of S. tuberosum. Two-year mean values of bruising resistance of tested genotypes indicated significant variability of the trait. Analysis of variance showed significant effects of genotype, year and interaction between them on the trait. Broad-sense heritability of bruising resistance was estimated as moderately high, Hb=0.73. Content of L-tyrosine, the main substrate of discoloration reaction, was not significantly correlated with brusing in tested diploid hybrids. The clones, that were resistant to blackspot bruise, also combined quality traits and resistances to many pathogens. All these traits could be transferred together into tetraploid level in 4x×2x crosses via male 2n gametes produced by diploid hybrids.Resumen La Resistencia al daño mecánico es un carácter importante en la calidad de la papa que depende de múlti-ples factores genéticos y del ambiente. Se evaluaron 31 híbridos diploides interespecíficos y dos estándares tetraploides para resistencia a la magulladura en dos años. Los diploides se originaron de las cruzas entre especies silvestres y primitivas de Solanum y dihaploides de S. tuberosum. Los valores de las medias de dos años de resistencia al daño de los genotipos probados indicaron variabilidad significativa del carácter. El análisis de varianza mostró efectos significativos de genotipo, año e interacción entre ellos en el carácter. Heredabilidad, en un amplio sentido de resistencia al daño mecánico, se estimó como moderadamente alta, Hb=0.73. El contenido de L-tirosina, el principal sustrato de la reacción de oscurecimiento no estuvo correlacionado significativamente con el daño en los híbridos diploides probados. Los clones, que fueron resistentes a la mancha oscura, también combinaron los caracteres de calidad y resistencia a muchos patógenos. Todos estos caracteres pudieron transferirse juntos a nivel tetraploide en cruzas 4x × 2x vía gametos macho 2n producidos en híbridos diploides.