Here we studied the demographical history of Caryocar brasiliense (Caryocaraceae), by coupling ecological niche modeling (ENM) and statistical phylogeography. Analyses were based on the polymorphism of 147 individuals sampled in 12 populations for the chloroplast genome. C. brasiliense presented low genetic diversity but high population genetic differentiation, which is not correlated with geographical distances among localities. The most ancient lineage divergence from southern and western Cerrado boundaries occurred around ~3.3 ± 2.3 Myr BP. The simulation of demographic scenarios showed that the diversity pattern found so far for C. brasiliense is most likely due to a range retraction during the last glacial maximum (LGM, 21 kyr BP), leading to multiple refugia. The paleodistribution models and coalescent analyses strongly suggest that the current distribution of C. brasiliense is wider than during the dry periods of the Quaternary.
Aim We investigated the phylogenetic structure of woody Caesalpinioideae species to address whether in situ diversification or habitat shifts from other biomes explain the species diversity in the Cerrado.Location Amazon and Atlantic rain forests, Cerrado and Caatinga in Brazil. MethodsWe obtained occurrence data and generated a phylogenetic hypothesis for all woody Caesalpinioideae species occurring in Brazil. We calculated the net relatedness index (NRI) to measure the phylogenetic structure and performed a nodesig analysis to identify which clades contributed to phylogenetic clustering or overdispersion. We also calculated phylogenetic and taxonomic indices of beta diversity to investigate species turnover between Cerrado habitats and neighbouring biomes.Results Species occurring in savannas and forested savannas were more related than expected by chance, i.e. phylogenetic clustering. Clades that were overabundant in savannas and forested savannas, such as Bauhinia, were poorly represented in neighbouring biomes, providing evidence of in situ diversification in some lineages. Savannas shared clades and showed lower phylogenetic than taxonomic dissimilarity from Caatinga, consistent with habitat shifts, mainly in the Cassia and Caesalpinia clades. Main conclusionsDry, open habitats (savannas, forested savannas and Caatinga) have lineages that diversified more recently than those in forest habitats. Caesalpinioideae lineages from savannas and Caatinga are closely related, and this dissimilarity was due to both turnover (55.5%) and nestedness (44.5%). Hence, species inhabiting Caatinga and savannas are often resolved as pairs of sister species, indicating habitat shifts (especially in the Cassia and Caesalpinia clades). The higher phylogenetic diversity of species in the Caatinga than in savanna and forested savanna may indicate that lineage shifts may have occurred, mainly from the Caatinga into the savanna habitats. Phylogenetic and taxonomic dissimilarity of savannas with Amazon and Atlantic rain forests was mainly due to the turnover of lineages, with evidence of in situ diversification in some clades, especially Bauhinia.
Environmental and geographical variables are known drivers of community assembly, however their influence on phylogenetic structure and phylogenetic beta diversity of lineages within different bioregions is not well-understood. Using Neotropical palms as a model, we investigate how environmental and geographical variables affect the assembly of lineages into bioregions across an evolutionary time scale. We also determine lineage shifts between tropical (TRF) and non-tropical (non-TRF) forests. Our results identify that distance and area explain phylogenetic dissimilarity among bioregions. Lineages in smaller bioregions are a subset of larger bioregions and contribute significantly to the nestedness component of phylogenetic dissimilarity, here interpreted as evidence for a bioregional shift. We found a significant tendency of habitat shifts occurring preferentially between TRF and non-TRF bioregions (31 shifts) than from non-TRF to TRF (24) or from TRF to TRF (11) and non-TRF to non-TRF (9). Our results also present cases where low dissimilarity is found between TRF and non-TRF bioregions. Most bioregions showed phylogenetic clustering and larger bioregions tended to be more clustered than smaller ones, with a higher species turnover component of phylogenetic dissimilarity. However, phylogenetic structure did not differ between TRF and non-TRF bioregions and diversification rates were higher in only two lineages, Attaleinae and Bactridinae, which are widespread and overabundant in both TRF and non-TRF bioregions. Area and distance significantly affected Neotropical palm community assembly and contributed more than environmental variables. Despite palms being emblematic humid forest elements, we found multiple shifts from humid to dry bioregions, showing that palms are also important components of these environments.
ABSTRACT. We here investigated the kin structure and pattern of dispersal in the black-and-gold howler monkey (Alouatta caraya, Platyrrhini, Atelidae) based on genotype differences at nine microsatellite loci of 48 individuals from eight social groups along the riparian forest of the Tocantins River, Brazil. The genetic diversity (H E = 0.647) was similar to or higher than previously reported values in other Alouatta species. Given that no spatial kinship structure was detected, we found no evidence that dispersal was constrained by distance within the spatial scale analyzed (<25 km). Although no evidence was found for sex-biased dispersal, our results strongly suggest that extra-group copulations are common in A. caraya, and that both males and females disperse from their natal group.
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