Proof of concept of Bayesian integrated QTL analyses across pedigree-related families from breeding programs of an outbreeding species. Results include QTL confidence intervals, individuals' genotype probabilities and genomic breeding values. Bayesian QTL linkage mapping approaches offer the flexibility to study multiple full sib families with known pedigrees simultaneously. Such a joint analysis increases the probability of detecting these quantitative trait loci (QTL) and provide insight of the magnitude of QTL across different genetic backgrounds. Here, we present an improved Bayesian multi-QTL pedigree-based approach on an outcrossing species using progenies with different (complex) genetic relationships. Different modeling assumptions were studied in the QTL analyses, i.e., the a priori expected number of QTL varied and polygenic effects were considered. The inferences include number of QTL, additive QTL effect sizes and supporting credible intervals, posterior probabilities of QTL genotypes for all individuals in the dataset, and QTL-based as well as genome-wide breeding values. All these features have been implemented in the FlexQTL(™) software. We analyzed fruit firmness in a large apple dataset that comprised 1,347 individuals forming 27 full sib families and their known ancestral pedigrees, with genotypes for 87 SSR markers on 17 chromosomes. We report strong or positive evidence for 14 QTL for fruit firmness on eight chromosomes, validating our approach as several of these QTL were reported previously, though dispersed over a series of studies based on single mapping populations. Interpretation of linked QTL was possible via individuals' QTL genotypes. The correlation between the genomic breeding values and phenotypes was on average 90 %, but varied with the number of detected QTL in a family. The detailed posterior knowledge on QTL of potential parents is critical for the efficiency of marker-assisted breeding.
Powdery mildew (Blumeria graminis f. sp. tritici) is one of the major diseases of wheat (Triticum aestivum). Adult plant resistance (APR) to powdery mildew is considered more durable than resistance conferred by major race-specific resistance genes. The objective of the present study was a better understanding of the genetic basis of APR in RE714 by means of QTL analysis of several resistance scores along the growing season. A population of 160 recombinant inbred lines obtained from the cross between RE714 and Hardi (susceptible) was assessed for APR under natural infection conditions during 3 years and a genetic map with whole genome coverage was developed with microsatellite and AFLP markers in this population. Two major QTL on chromosomes 5D and 6A were detected each year, and 6 minor QTL were detected only in 1 or 2 years. The QTL on chromosome 5D was detected during all the growing season each year and its R 2 value varied between 8.5 and 56.3%, whereas the QTL on chromosome 6A was detected at 1-4 scoring dates in the 3 years, and its R 2 value varied between 6.1 and 20.5%. The two QTL explained between 24.4 and 52.1% of the phenotypic variance for AUDPC, depending on the year. The models including QTL and cofactors in the composite interval mapping explained between 29 and 72% of the variance. The molecular markers linked to the two major QTL could be used in marker-assisted selection for adult plant resistance to powdery mildew.
Introgression breeding can contribute to broadening the genetic background of eggplant (Solanum melongena). We used six eggplant varieties and 44 interspecific hybrids between these eggplant accessions and 10 accessions of wild relatives from the primary genepool species S. insanum and secondary genepool species S. anguivi, S. dasyphyllum, S. incanum, S. lichtensteinii, and S. tomentosum to obtain first backcross generations to S. melongena. Pollen viability in cultivated and wild parents and interspecific hybrids with S. insanum was high, while for interspecific hybrids with secondary genepool species it was variable. First backcross generations to S. melongena were obtained with interspecific hybrids of all the wild species, with the best results being obtained in crosses with hybrids between S. melongena and S. insanum. However, ample differences were observed among eggplant varieties in the success of the crosses. Additionally, the six eggplant varieties were crossed with secondary genepool species S. campylacanthum, S. lidii and S. vespertilio and with tertiary genepool species S. bonariense, S. elaeagnifolium and S. sisymbriifolium with the aim of obtaining new interspecific hybrids. Successful interspecific hybridization was achieved with the three new secondary genepool species tested and, using embryo rescue, with the tertiary genepool species S. elaeagnifolium. The new backcross generations and interspecific hybrids obtained will contribute to broadening the genetic background of the eggplant and to the genetic enhancement of this crop.
A keloid scar is a benign skin tumor and we aimed to assess the Quality of Life (QoL) of black Africans with keloid scars based on the Dermatology Life Quality Index (DLQI). We conducted a cross-sectional descriptive study in the department of dermatology of the teaching hospital of Treichville in Ivory Coast. We recruited 132 patients with keloid and 3612 dermatoses without keloid: The prevalence was 3.50% (132/3753). We included 120 patients aged from 16 to 63 years old, the sex ratio was 0.46 (38/82) and the mean age was 34.20 years. Keloid scars were mostly secondary to skin trauma in 30.00 % and infection in 21.67%. The commonest site was the ear in 29.17 %. We reported Keloid with pain in 53.33% and pruritus in 95.00%. We observed psychological impact in 65.83%. The DLQI scores were moderate and high in 61.66 %. QoL was impacted significantly when keloid was associated with pain (p=0.046), pruritus (p=0.81) and functional disorders (p=0.29). The DLQI score could be a valuable tool to assess QoL in black African patients with keloid, for better treatment option.
Crop wild relatives (CWRs) have barely been used in eggplant (Solanum melongena) breeding. However, introgression breeding may help in coping with the challenges posed by climate change. During the rainy and dry seasons, we evaluated nine accessions of eggplant, nine accessions of seven related species (of which six are CWRs and one is a cultivated relative), and 12 interspecific hybrids. Drought tolerance scores, calculated as ratios of growing rates and ratios of mean values during the rainy and dry seasons, were obtained for vegetative growth and yield‐related traits. Considering the vegetative growth and yield‐related traits evaluated, the F1 hybrid progenies of eggplant with S. insanum MEL1 × INS2 and MEL4 × INS3, S. anguivi MEL6 × ANG1, and S. dasyphyllum MEL6 × DAS1, plus the S. sysimbriifolium accession SIS1, displayed drought tolerance. Small to large gaps were observed between phenotypic and genotypic CVs of drought tolerance scores, reflecting variable influence of environmental factors on drought tolerance of the traits evaluated. In addition, the narrow‐sense heritability was generally moderate, indicating that genes with dominance and/or epistasis effects may be involved in the expression of drought tolerance. High genotypic correlations for drought tolerance scores between pairs of traits such as branching index and leaf length, leaf petiole diameter and plant height, number of stamens per flower, and fruit pedicel length suggest that drought tolerance of these traits is controlled by genes that are in linkage disequilibrium and/or have pleiotropic effects. The results are relevant for the development of drought‐tolerant cultivars of eggplant.
The hypersensitive resistance of the genotype '385.484.13' of Solanum sparsipilum to Meloidogyne incognita, one of the southern root-knot nematodes and their Mi virulent populations was analysed. Genetic control of the hypersensitive reaction was assessed based on segregation of the necrotic reaction in infected roots of diploid F1 plants obtained from the cross of the genotype '385.484.13' with the dihaploid susceptible potato genotype 'Keltia H12'. Two distinct tests showed a distorted segregation compared to the hypothetical ratio expected for a monogenic control. We hypothesised that the resistance is based on one dominant gene designated Mh and linked to the self incompatibility locus-S. Hypersensitive plants prevented juveniles from feeding, developing and reproducing. Ninety percent of invading juveniles remained undeveloped 6 weeks after inoculation. Almost all the adults were males and only very rarely were females observed. Inhibition of the development of juveniles into females showed a bimodal distribution of the genotypes: hypersensitive ones allowed almost no development of females whilst all the juveniles became females in nonhypersensitive plants. That result supports the hypothesis of a monogenic control of the resistance. The resistance was broken when plants were grown at 30 • C. The histology of the hypersensitive reaction was very similar to that of the Mi gene of tomato and of some Me genes of pepper. Necrotic cells were localised not only around the head of the juveniles but also surrounding their bodies. In addition, healthy cells adjacent to necrotised ones underwent divisions parallel to the juveniles. Intercellular spaces between these cells and necrotised ones enlarged markedly, which is consistent with a process leading to isolation of the necrotic area from healthy tissue.
Abstract:The Solanum aethiopicum Gilo group, described as homogeneous, shows a high diversity, at least at the morphological level. In Côte d'Ivoire, farmers distinguish three subgroups, named "N'Drowa", "Klogbo" and "Gnangnan", within this group. Data were obtained from 10 quantitative and 14 qualitative morpho-agronomic traits measured in 326 accessions of Gilo eggplants, at flowering and fruiting stages. Univariate and multivariate analyses allowed clearly clustering the studied accessions into the three subgroups. Fruit taste, leaf blade width, fruit diameter, leaf blade length, fruit weight, fruit color at commercial ripeness, petiole length, germination time, plant breadth, fruit position on the plant, fruit length and flowering time were, in decreasing order, the twelve most discriminating traits. Compared to the "Gnangnan" subgroup, the "N'Drowa" subgroup has smaller plant breadth and larger leaves. The fruits of this subgroup were mainly white at commercial ripeness, larger and sweeter. Most of the traits of the "Klogbo" subgroup were intermediate between those of the "N'Drowa" and "Gnangnan" subgroups. Our results could contribute to a better understanding of S. aethiopicum diversity and to the development of a core collection for African eggplant breeding. OPEN ACCESSAgriculture 2014, 4 261
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