The need to boost agricultural production in the coming decades in a climate change scenario requires new approaches for the development of new crop varieties that are more resilient and more efficient in the use of resources. Crop wild relatives (CWRs) are a source of variation for many traits of interest in breeding, in particular tolerance to abiotic and biotic stresses. However, their potential in plant breeding has largely remained unexploited. CWRs can make an effective contribution to broadening the genetic base of crops and to introgressing traits of interest, but their direct use by breeders in breeding programs is usually not feasible due to the presence of undesirable traits in CWRs (linkage drag) and frequent breeding barriers with the crop. Here we call for a new approach, which we tentatively call 'introgressiomics', which consists of mass scale development of plant materials and populations with introgressions from CWRs into the genetic background of crops. Introgressiomics is a form of

BackgroundEggplant is a powerful source of polyphenols which seems to play a key role in the prevention of several human diseases, such as cancer and diabetes. Chlorogenic acid is the polyphenol most present in eggplant, comprising between the 70% and 90% of the total polyphenol content. Introduction of the high chlorogenic acid content of wild relatives, such as S. incanum, into eggplant varieties will be of great interest. A potential side effect of the increased level polyphenols could be a decrease on apparent quality due to browning caused by the polyphenol oxidase enzymes mediated oxidation of polyphenols. We report the development of a new interspecific S. melongena × S. incanum linkage map based on a first backcross generation (BC1) towards the cultivated S. melongena as a tool for introgressing S. incanum alleles involved in the biosynthesis of chlorogenic acid in the genetic background of S. melongena.ResultsThe interspecific genetic linkage map of eggplant developed in this work anchor the most informative previously published genetic maps of eggplant using common markers. The 91 BC1 plants of the mapping population were genotyped with 42 COSII, 99 SSRs, 88 AFLPs, 9 CAPS, 4 SNPs and one morphological polymorphic markers. Segregation marker data resulted in a map encompassing 1085 cM distributed in 12 linkage groups. Based on the syntheny with tomato, the candidate genes involved in the core chlorogenic acid synthesis pathway in eggplant (PAL, C4H, 4CL, HCT, C3′H, HQT) as well as five polyphenol oxidase (PPO1, PPO2, PPO3, PPO4, PPO5) were mapped. Except for 4CL and HCT chlorogenic acid genes were not linked. On the contrary, all PPO genes clustered together. Candidate genes important in domestication such as fruit shape (OVATE, SISUN1) and prickliness were also located.ConclusionsThe achievements in location of candidate genes will allow the search of favorable alleles employing marker-assisted selection in order to develop new varieties with higher chlorogenic content alongside a lower polyphenol oxidase activity. This will result into an enhanced product showing a lower fruit flesh browning with improved human health properties.Electronic supplementary materialThe online version of this article (doi:10.1186/s12870-014-0350-z) contains supplementary material, which is available to authorized users.

Solanum incanum, the wild ancestor of eggplant, Solanum melongena, has been considered as a source of variation for high content of phenolic acid conjugates in breeding programmes aimed at improving the functional quality of eggplant. We have evaluated the morphological and phenolic acids content in an interspecific family including S. incanum (P1), S. melongena (P2), their interspecific hybrid (F1), progeny from the selfing of the F1 (F2) and the backcross of the F1 to P2 (BC1P2). Many morphological differences were found between parents, while the F1 was intermediate for most traits. However, F1 plants were taller and pricklier and presented higher fruit flesh browning than any of the parents. F2 and BC1P2 were morphologically highly variable and the results obtained suggest that a rapid recovery of the characteristic combination of S. melongena traits can be achieved in a few backcross generations. Segregation for prickliness was found to be compatible with simple genetic control, prickliness being dominant over non-prickliness. A total of 16 phenolic acid conjugates were studied, of which chlorogenic acid (5-O-(E)-caffeoylquinic acid) was the most common compound in all samples, averaging 77.8% of all hydroxycinnamic acid derivatives. Contents of total phenolic acid conjugates were much higher in S. incanum than in S. melongena fruit flesh, and no major differences were found in the profile of phenolic acids among parents. The interspecific hybrid (F1) was intermediate between the two parents in phenolic acids content. Non-segregating generations presented considerable variation in phenolic acids content, but the range of variation was wider in segregating F2 and BC1P2 generations. Additive genetic effects were the most important in explaining the results obtained for the phenolic acids content. A number of BC1P2 plants presented a good combination of phenolic acids content and fruit weight or flesh browning. Overall, the results demonstrate that improvement of functional quality in S. melongena can be obtained using S. incanum as a donor of alleles for high phenolic acids content.

Wild relatives represent a source of variation for many traits of interest for eggplant (Solanum melongena) breeding, as well as for broadening the genetic base of this crop. However, interspecific hybridization with wild relatives has been barely used in eggplant breeding programs. As initiation of an introgression breeding program we performed 1424 interspecific hybridizations between six accessions of eggplant from the Occidental and Oriental groups and 19 accessions of 12 wild species from the primary (Solanum incanum and Solanum insanum), secondary (Solanum anguivi, Solanum dasyphyllum, Solanum lichtensteinii, Solanum linnaeanum, Solanum pyracanthos, Solanum tomentosum, and Solanum violaceum), and tertiary (Solanum elaeagnifolium, Solanum sisymbriifolium, and Solanum torvum) genepools. Fruit set, hybrid seed, and seed germination were obtained between Solanum melongena and all wild species of the primary and secondary genepools. The highest fruit set percentage and quantity of seeds per fruit were obtained with the two primary genepool species S. incanum and S. insanum as well as with some secondary genepool species, like S. anguivi, S. dasyphyllum, or S. lichtensteinii, although some differences among species were observed depending on the direction of the hybridization. For small-fruited wild species, the number of seeds per fruit was lower when using them as maternal parent. Regarding tertiary genepool species, fruit set was obtained only in interspecific hybridizations of eggplant with S. sisymbriifolium and S. torvum, although the fruit of the former were parthenocarpic. However, it was possible to rescue viable interspecific hybrids with S. torvum. In total we obtained 58 interspecific hybrid combinations (excluding reciprocals) between eggplant and wild relatives. Some differences were observed among S. melongena accessions in the degree of success of interspecific hybridization, so that the number of hybrid combinations obtained for each accession ranged between 7 (MEL2) and 16 (MEL1). Hybridity of putative interspecific hybrid plantlets was confirmed with a morphological trait (leaf prickliness) and 12 single nucleotide polymorphism markers. The results show that eggplant is amenable to interspecific hybridization with a large number of wild species, including tertiary genepool materials. These hybrid materials are the starting point for introgression breeding in eggplant and in some cases might also be useful as rootstocks for eggplant grafting.

Eggplant (Solanum melongena) is related to a large number of wild species that are a source of variation for breeding programmes, in particular for traits related to adaptation to climate change. However, wild species remain largely unexploited for eggplant breeding. Detailed phenotypic characterization of wild species and their hybrids with eggplant may allow identifying promising wild species and information on the genetic control and heterosis of relevant traits. We characterizated six eggplant accessions, 21 accessions of 12 wild species (the only primary genepool species S. insanum and 11 secondary genepool species) and 45 interspecific hybrids of eggplant with wild species (18 with S. insanum and 27 with secondary genepool species) using 27 conventional morphological descriptors and 20 fruit morphometric descriptors obtained with the phenomics tool Tomato Analyzer. Significant differences were observed among cultivated, wild and interspecific hybrid groups for 18 conventional and 18 Tomato Analyzer descriptors, with hybrids generally having intermediate values. Wild species were generally more variable than cultivated accessions and interspecific hybrids displayed intermediate ranges of variation and coefficient of variation (CV) values, except for fruit shape traits in which the latter were the most variable. The multivariate principal components analysis (PCA) reveals a clear separation of wild species and cultivated accessions. Interspecific hybrids with S. insanum plotted closer to cultivated eggplant, while hybrids with secondary genepool species generally clustered together with wild species. Many differences were observed among wild species for traits of agronomic interest, which allowed identifying species of greatest potential interest for eggplant breeding. Heterosis values were positive for most vigor-related traits, while for fruit size values were close to zero for hybrids with S. incanum and highly negative for hybrids with secondary genepool species. Our results allowed the identification of potentially interesting wild species and interspecific hybrids for introgression breeding in eggplant. This is an important step for broadening the genetic base of eggplant and for breeding for adaptation to climate change in this crop.