The turkey microbiome is largely understudied, despite its relationship with bird health and growth, and the prevalence of human pathogens such as Campylobacter spp. In this study we investigated the microbiome within the small intestine (SI), caeca (C), large intestine (LI), and cloaca (CL) of turkeys at 6, 10, and 16 weeks of age. Eight turkeys were dissected within each age category and the contents of the SI, C, LI, and CL were harvested. 16S rDNA based QPCR was performed on all samples and samples for the four locations within three birds/age group were sequenced using ion torrent-based sequencing of the 16S rDNA. Sequencing data showed on a genus level, an abundance of Lactobacillus, Streptococcus, and Clostridium XI (38.2, 28.1, and 13.0% respectively) irrespective of location and age. The caeca exhibited the greatest microbiome diversity throughout the development of the turkey. PICRUSt data predicted an array of bacterial function, with most differences being apparent in the caeca of the turkeys as they matured. QPCR revealed that the caeca within 10 week old birds, contained the most Campylobacter spp. Understanding the microbial ecology of the turkey gastrointestinal tract is essential in terms of understanding production efficiency and in order to develop novel strategies for targeting Campylobacter spp.

Response of white clover (Trifolium repens L.) leaf area to water deficit depends on three processes: individual leaf expansion, phytomer production, and stolon branching. We have evaluated these processes in five clones under a wide range of conditions. Four experiments of 60 to 120 d duration were conducted: two in a growth chamber, one in a greenhouse, and one outdoors. Water supply was managed in such a way that predawn leaf water potential and day‐time leaf relative water content (RWC) were maintained at constant values during deficit periods of 20 to 68 d. This was achieved by growing plants either in soil columns with irrigation controlled by tensiometers, or in vermiculite, on top of foam columns with a controlled level of water inside the foam. Leaf appearance rate (LAR) and leaf initiation rate remained constant with time at a given RWC, but decreased with decreases in RWC. A reduction in individual leaf area (LA) was observed in all leaves which experienced water deficit during part of the expansion period. Stolon branching decreased considerably with relatively mild deficits. Similar relationships between relative reductions in RWC (compared with control plants), and relative reductions in LA, LAR and stolon number were observed in all experiments. Short deficits (1–2 wk) caused a 20 to 30% reduction in stolon number and individual LA but no change in leaf number per stolon. Longer deficits with mild, intermediate, or severe intensities caused major reductions in stolon number, individual leaf area, and number of leaves per stolon, respectively, with respect to the reduction in plant leaf area. In addition to individual leaf area, phytomer production and stolon branching make major contributions to drought‐induced reductions in leaf area depending upon the type of water deficit.

This is the author accepted manuscript. The final version is available from Elsevier via http://dx.doi.org/10.1016/j.jcs.2017.01.005Warmer temperatures and increasing interest in high provenance food and drink products are creating new opportunities for cereal growing in northern Europe. Nevertheless, cultivation of oats and barley in these areas for malting and milling remains a challenge, primarily because of the weather, and there are few reports of their nutritional content from this region. In this study, trials in Orkney compared agronomic characteristics and nutritional content of recommended UK oat and barley varieties with Scandinavian varieties over three years. For a subset of varieties, nutritional content was compared with samples cultivated in more southerly sites. For Orkney, barley was considered a more suitable crop than oats because varieties matured earlier. In both crops, Scandinavian varieties matured earlier than UK varieties and some produced comparable yields. The range of values for macronutrients and minerals in oats and barley in Orkney were similar to those reported previously for other locations, but there were some significant differences attributable to variety and year. Compared with grain samples from more southerly locations, oats in Orkney had a significantly lower ?-glucan and higher sodium content. The lower ?-glucan may have resulted from higher rainfall and lower temperatures during the months of grain filling and maturationauthorsversionPeer reviewe

Field experiments have shown that water deficit can either increase or decrease white clover (Trifolium repens L.) seed yield depending on its intensity. In order to explain this behavior, we evaluated the effect of water deficit intensity on the components of plant reproductive potential: number of reproductive stolons produced per plant (NSr), inflorescences per reproductive stolon (NI), viable florets per inflorescence (NFv) and ovules per floret (NO). Four experiments were conducted in greenhouse or growth chamber on white clover plants grown in large or small soil columns, or in small pots with vermiculite. Water supply was managed to maintain relatively constant values for predawn soil water potential and midday leaf relative water content (RWC) during the deficit period (20 to 68 d). Water deficit treatments were classified as moderate (M) or severe (S) on the basis of the reduction of RWC compared with the well‐watered plants (C) and of previously established relationships between RWC, soil water potential and vegetative growth. The development of inflorescences, florets and ovules were largely unaffected in M plants, while vegetative growth was depressed by reductions in leaf number per stolon (up to 30%), leaf area (30 to 40%), and by inhibition of stolon branching. Moderate water deficits induced an increase in the percentage of reproductive stolons per plant and reproductive phytomers per stolon. Although this positive effect on the reproductive to vegetative balance was generally observed with S water deficit, the reproductive potential of S plants was strongly depressed relative to C and M plants because of reduced stolon branching, phytomer production, and increased inflorescence and floret abortion. These results show that inflorescence, floret and ovule development of white clover were not impaired by a moderate water deficit that reduced vegetative growth, and suggest good prospects to manage optimal soil‐plant status to maximize potential of seed production.

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1. Naked oats belong to the same species as 'common oats', Avena sativa, but have a non-lignified husk which readily becomes detached during harvesting. The absence of the indigestible husk can be predicted to give an increased metabolisable energy (ME) content for poultry. 2. Measurements of true metabolisable energy (TME N ) were performed on 3-week-old broiler chicks (Cobb males), adult cockerels (ISA Brown, greater than one year old) and 7-week-old turkeys (BUT T8 males). The measurements were repeated in 2000, 2001 and 2002, with some measurements on a subset of varieties in 2004. 3. High-oil naked oat lines yielded 12% more energy (TME N ) than wheat. Naked oats, excluding the experimental high-oil lines, yielded 8Á5% more energy than simultaneously assayed wheat samples. 4. In samples from the 2004 harvest, conventional oats gave TME N values about 13% lower than those of wheat. 5. The addition of -glucanase produced an increase of about 4% in the apparent metabolisable energy (AME) of oats for broiler chickens. This effect was associated with a 70% decrease in the jejunal viscosity of broilers receiving a 500 g/kg naked-oat diet. 6. The oil content of naked oats was about 5 times greater than that of wheat, with the high-oil lines rising to more than 6 times greater. Naked oats had a lower starch content than wheat but not sufficiently lower to negate the energy benefits of the higher oil content. The crude protein (CP) contents of naked oats were similar to those of wheat, with the high-oil varieties tending to be higher in CP also.

Introduction Oats ( Avena sativa L.) are a whole grain cereal recognised for their health benefits and which are cultivated largely in temperate regions providing both a source of food for humans and animals, as well as being used in cosmetics and as a potential treatment for a number of diseases. Oats are known as being a cereal source high in dietary fibre (e.g. β-glucans), as well as being high in antioxidants, minerals and vitamins. Recently, oats have been gaining increased global attention due to their large number of beneficial health effects. Consumption of oats has been proven to lower blood LDL cholesterol levels and blood pressure, thus reducing the risk of heart disease, as well as reducing blood-sugar and insulin levels. Objectives Oats are seen as a low input cereal. Current agricultural guidelines on nitrogen application are believed to be suboptimal and only consider the effect of nitrogen on grain yield. It is important to understand the role of both variety and of crop management in determining nutritional quality of oats. In this study the response of yield, grain quality and grain metabolites to increasing nitrogen application to levels greater than current guidelines were investigated. Methods Four winter oat varieties (Mascani, Tardis, Balado and Gerald) were grown in a replicated nitrogen response trial consisting of a no added nitrogen control and four added nitrogen treatments between 50 and 200 kg N ha −1 in a randomised split-plot design. Grain yield, milling quality traits, β-glucan, total protein and oil content were assessed. The de-hulled oats (groats) were also subjected to a rapid Ultra High Performance Liquid Chromatography—Mass Spectrometry (UHPLC-MS) metabolomic screening approach. Results Application of nitrogen had a significant effect on grain yield but there was no significant difference between the response of the four varieties. Grain quality traits however displayed significant differences both between varieties and nitrogen application level. β-glucan content significantly increased with nitrogen application. The UHPLC-MS approach has provided a rapid, sub 15 min per sample, metabolite profiling method that is repeatable and appropriate for the screening of large numbers of cereal samples. The method captured a wide range of compounds, inclusive of primary metabolites such as the amino acids, organic acids, vitamins and lipids, as well as a number of key secondary metabolites, including the avenanthramides, caffeic acid, and sinapic acid and its derivatives and was able to identify distinct metabolic phenotypes for the varieties studied. Amino acid metabolism was massively upregulated by nitrogen supplementation as were total protein levels, whilst the levels of organic acids were decreased, likely due to them acting as a carbon skeleton source. Several TCA cycle intermediates were also impacted, potentially indic...

Highlights The response to nitrogen of 4 winter oat varieties in three field trials was analysed. A novel high-resolution method was developed to profile metabolite changes. Conditions that enhance yield do not necessarily result in higher nutritional value. Choice of variety is of equally high importance as the nitrogen levels applied.