Yersinia hibernica sp. nov., isolated from pig-production environments

Nguyen, Scott V.; Muthappa, Dechamma Mundanda; Hurley, Daniel; Donoghue, Orla; McCabe, Evonne; Anes, João; Schaffer, Kirsten; Murphy, Brenda; Buckley, Jim; Fanning, Séamus

doi:10.1099/ijsem.0.003422

Cited by 16 publications

(18 citation statements)

References 23 publications

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“…kristensenii respectively [17], but on the basis of nucleotide identity and 16S rRNA gene identity, these have been reclassified as Y. hibernica [14].…”

Section: Resultsmentioning

confidence: 99%

“…In previous studies, Y. hibernica LC20 and CFS1934 were reported in its inability to utilize sucrose [14, 15]. Analysis of the sucrose porin operon in closely related Y.…”

Section: Resultsmentioning

confidence: 99%

“…enterocolitica and Y. hibernica is very similar [14], it is nearly impossible to determine if previous reports of sucrose-negative Y. enterocolitica were potentially misidentified.…”

Section: Resultsmentioning

confidence: 99%

“…The potential ability to regulate inflammatory responses by phospholipases and to regulate virulence genes with YmoA suggest an ability to navigate mammalian gut lumens and indeed Y. hibernica strains have been isolated from rodent faeces [14, 16]. Nonetheless at this time, it is unknown if Y.…”

Section: Resultsmentioning

confidence: 99%

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Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism

et al. 2020

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Food-associated outbreaks linked to enteropathogenic Yersinia enterocolitica are of concern to public health. Pigs and their meat are recognized risk factors for transmission of Y. enterocolitica . This study aimed to describe the comparative genomics of Y. enterocolitica along with a number of misclassified Yersinia isolates, now constituting the recently described Yersinia hibernica . The latter was originally cultured from an environmental sample taken at a pig slaughterhouse. Unique features were identified in the genome of Y. hibernica, including a novel integrative conjugative element (ICE), denoted as ICE Yh-1 contained within a 255 kbp region of plasticity. In addition, a zebrafish embryo infection model was adapted and applied to assess the virulence potential among Yersinia isolates including Y. hibernica .

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“…kristensenii respectively [17], but on the basis of nucleotide identity and 16S rRNA gene identity, these have been reclassified as Y. hibernica [14].…”

Section: Resultsmentioning

confidence: 99%

“…In previous studies, Y. hibernica LC20 and CFS1934 were reported in its inability to utilize sucrose [14, 15]. Analysis of the sucrose porin operon in closely related Y.…”

Section: Resultsmentioning

confidence: 99%

“…enterocolitica and Y. hibernica is very similar [14], it is nearly impossible to determine if previous reports of sucrose-negative Y. enterocolitica were potentially misidentified.…”

Section: Resultsmentioning

confidence: 99%

Section: Resultsmentioning

confidence: 99%

See 2 more Smart Citations

Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism

et al. 2020

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“…A phylogenetic tree based on conserved core sequences used in a whole genome alignment was generated by Parsnp as previously described (27). The resulting phylogenetic tree was visualized in EvolView2 (28) and showed that Y. canariae clustered distinctly from other Yersinia species and was most closely related to the newly described Y. hibernica (27) ( Fig. 1 ).…”

Section: Genome Featuresmentioning

confidence: 99%

Yersinia canariaesp. nov., isolated from a human yersiniosis case

Nguyen

Greig

Hurley

et al. 2019

Preprint

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A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technology (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia , despite biochemical similarities to Yersinia enterocolitica. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chromosome is CP043727. The type strain is CFS3336 T (= NCTC 14382 T / =LMG Accession under process ).

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Prevalence, bio-serotype, antibiotic susceptibility and genotype of Yersinia enterocolitica and other Yersinia species isolated from retail and processed meats in Shaanxi Province, China

Lü

Chen

et al. 2022

LWT

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Yersinia hibernica sp. nov., isolated from pig-production environments

Cited by 16 publications

References 23 publications

Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism

Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism

Yersinia canariaesp. nov., isolated from a human yersiniosis case

Prevalence, bio-serotype, antibiotic susceptibility and genotype of Yersinia enterocolitica and other Yersinia species isolated from retail and processed meats in Shaanxi Province, China

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