Histone deacetylases (HDAC) 1 and 2 are highly similar enzymes that help regulate chromatin structure as the core catalytic components of corepressor complexes. Although tissue-specific deletion of HDAC1 and HDAC2 has demonstrated functional redundancy, germ-line deletion of HDAC1 in the mouse causes early embryonic lethality, whereas HDAC2 does not. To address the unique requirement for HDAC1 in early embryogenesis we have generated conditional knockout embryonic stem (ES) cells in which HDAC1 or HDAC2 genes can be inactivated. Deletion of HDAC1, but not HDAC2, causes a significant reduction in the HDAC activity of Sin3A, NuRD, and CoREST corepressor complexes. This reduced corepressor activity results in a specific 1.6-fold increase in histone H3 K56 acetylation (H3K56Ac), thus providing genetic evidence that H3K56Ac is a substrate of HDAC1. In culture, ES cell proliferation was unaffected by loss of either HDAC1 or HDAC2. Rather, we find that loss of HDAC1 affects ES cell differentiation. ES cells lacking either HDAC1 or HDAC2 were capable of forming embryoid bodies (EBs), which stimulates differentiation into the three primary germ layers. However, HDAC1-deficient EBs were significantly smaller, showed spontaneous rhythmic contraction, and increased expression of both cardiomyocyte and neuronal markers. In summary, our genetic study of HDAC1 and HDAC2 in ES cells, which mimic the embryonic epiblast, has identified a unique requirement for HDAC1 in the optimal activity of HDAC1/2 corepressor complexes and cell fate determination during differentiation.corepressor | acetylation | deacetylation | chromatin C lass I histone deacetylases (HDAC1, -2, -3, and -8) are highly conserved enzymes present in the nucleus of all cells, where they help modulate levels of gene expression (1). The best characterized substrates of HDACs are the N-terminal tails of the core histones H2A, H2B, H3 and H4. Deacetylation of histone tails results in a "tightening" of chromatin, due to the electrostatic potential of unacetylated lysine residues to promote internucleosomal interactions (2, 3) and the loss of a binding site for components of the transcriptional machinery containing a bromodomain, e.g., TAFII1 (4).Among the class I HDACs, HDAC1 and HDAC2 are the most similar (83% amino acid identity), sharing an almost identical catalytic core domain and a conserved C-terminal tail (5). In mammalian cells HDAC1 and HDAC2 interact together (6) to form the catalytic core of a number of higher-order complexes including Sin3A, NuRD, CoREST, and NODE (reviewed in ref. 1). These complexes are then targeted to chromatin by sequencespecific (often cell-specific) transcription factors to repress transcription in cooperation with other chromatin modifiers, such as the lysine-specific demethylase, LSD1, in the CoREST complex (7-9). As part of these multiprotein complexes, the activity of HDAC1 and HDAC2 has been implicated in the regulation of cell cycle progression by tumor suppressors (10-12), differentiation (13, 14), cellular aging (15), and c...