2016
DOI: 10.1038/nmeth.3897
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Varying label density allows artifact-free analysis of membrane-protein nanoclusters

Abstract: We present a method to robustly discriminate clustered from randomly distributed molecules detected with techniques based on single-molecule localization microscopy, such as PALM and STORM. The approach is based on deliberate variation of labeling density, such as titration of fluorescent antibody, combined with quantitative cluster analysis, and it thereby circumvents the problem of cluster artifacts generated by overcounting of blinking fluorophores. The method was used to analyze nanocluster formation in re… Show more

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Cited by 132 publications
(145 citation statements)
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References 25 publications
(31 reference statements)
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“…In order to study the detailed assembly and regulation mechanisms of MCU complex structures in the mitochondrion, we employed Photo-activated localization microscopy (PALM). HeLa cells were transfected with MCU and MCU C97A tagged with photo switchable protein mEos3.2 (Baumgart et al, 2016). Similar to the above described imaging data, PALM acquisition images showed random distribution of MCU whereas MCU C97A appeared to assemble as clusters in the globular like inner mitochondrial membrane (Figure 5H).…”
Section: Resultsmentioning
confidence: 99%
“…In order to study the detailed assembly and regulation mechanisms of MCU complex structures in the mitochondrion, we employed Photo-activated localization microscopy (PALM). HeLa cells were transfected with MCU and MCU C97A tagged with photo switchable protein mEos3.2 (Baumgart et al, 2016). Similar to the above described imaging data, PALM acquisition images showed random distribution of MCU whereas MCU C97A appeared to assemble as clusters in the globular like inner mitochondrial membrane (Figure 5H).…”
Section: Resultsmentioning
confidence: 99%
“…The examinations touch the receptor clustering as a challenge for microscopic density recording dynamics, which is addressed by a receptor titration approach [92]. Approaches based on photoactivated light microscopy (PALM) as well as stochastic optical reconstruction microscopy (STORM) related techniques focus on the clustering dynamics of membrane receptors in cells of the immune system upon stimulation [93,94,95].…”
Section: Resultsmentioning
confidence: 99%
“…Its drawback is that undercounting or overcounting of the fluorescent labels can alter the details of the reconstructed structures 173 . Micropipette assays.…”
Section: Structured Illumination Microscopy (Sim) This Technique Impmentioning
confidence: 99%