Timing of snowmelt is a crucial factor determining the phenological schedule of alpine plants. A long-term monitoring of snowmelt regimes in a Japanese alpine revealed that snowmelt season has been accelerated during last 17 years in early snowmelt places, but such a trend has not been detected in late snowmelt places. This indicates that the warming effect on snowmelt pattern may be site specific. Flowering phenology of fellfield plants in an exposed wind-blown habitat was consistent between unusually warm year (1998) and normal year (2001). In contrast, flowering occurrence of snowbed plants varied greatly between the years depending on the snowmelt time.The number of flowering species in a fellfield community was large in the middle to late June and the middle to late July. Flowering of an early-melt snowbed community showed a peak in the middle of flowering season, and that of a late-melt snowbed community showed a peak in early flowering season. These habitat-specific phenological patterns were consistent between 1998 and 2001. Effects of the variation in flowering timing on seed-set success were evaluated for an entomophilous snowbed herb, Peucedanum multivittatum, along the snowmelt gradient during five years. When flowering occurred prior to early August, mean temperature during the flowering season positively influenced the seed set. When flowering occurred later than early August, however, plants enjoyed high seed-set success irrespective of temperature conditions if frost damage was absent. This is probably because the availability of pollinators depends not only on ambient temperature but also on seasonal progress. These results suggest that the effects of climate change on biological interaction may vary depending on habitat in the alpine ecosystem in which diverse snowmelt patterns create complicated seasonality for plants within a local area.