Because the nuclear peroxisome proliferator-activated receptors (PPAR) 1 regulate expression of genes involved in fatty acid oxidation (PPAR␣) and adiposity (PPAR␥), it has been postulated that PPARs play important roles in diabetes, atherosclerosis, and obesity (reviewed in Refs. 1-6). In support of this hypothesis, fatty acid oxidation is diminished in PPAR␣ geneablated mice (7-9) accompanied by fat accumulation (heart (10), centrilobular regions of the liver (7, 8), adipose tissue (11)), hypercholesterolemia (12), and hypoglycemia (10). (13). These data strongly support the possibility that LCFAs may be natural ligands for PPARs and that LCFAs may be more specific ligands for PPAR␣ as compared with other PPARs. Unfortunately, physiological significance of these findings is not yet clear since it is not known whether unesterified, unbound LCFAs are present in the cell and that their concentration in the nucleus is at least in the nanomolar range.A variety of studies suggest that unesterified LCFAs are present within the cell at levels physiologically significant for regulating PPAR␣ activity. Based on the Michaelis constant of long chain fatty acyl-CoA synthetase, the total cellular unesterified LCFA concentration has been estimated near 20 M (18). However, because of the presence of intracellular fatty acid-binding proteins (FABPs) (reviewed in Ref. 19), the intracellular concentration of unbound, unesterified LCFAs is thought to be nearly 3 orders of magnitude lower, near 7-50 nM in liver, heart, and intestine (20, 21). Whether nuclear levels of unbound LCFAs are also in the nanomolar range is not known. Another key question is the origin of nuclear unesterified LCFAs. Nuclei do not synthesize LCFAs but must import them from the cytosol (22-24) by as yet unresolved transport systems. Nearly 20 and 4% of the plasma-derived unesterified LCFAs appear in nuclei isolated from hepatocytes (23) and cerebral cortex or leukemic lymphocytes (22, 24 -26), respectively. Despite data suggesting the presence of high (up to 40% of nuclear lipids) levels of unesterified LCFAs in isolated nuclei (27), subcellular fractionation studies may be complicated by LCFAs derived from lipolytic release, transfer from other intracellular sites, or cross-contamination with other mem-