We analysed contributions of variable heavy (FdV H ) and variable light (FdV L ) domains in comparison to scFv (FdV H +FdV L ) of naturally occurring polyspecific bovine IgM with an exceptionally long CDR3H and an induced monospecific bovine herpes virus-1 (BoHV-1) neutralizing IgG1 antibody in the context of to antigen-binding site and antibody function. Various recombinant FdV H , FdV L and scFv were constructed and expressed in Pichia pastoris from the bovine IgM and IgG1 antibody encoding cDNA. The scFv1H12 showed polyspecific antigen binding similar to parent IgM antibody, though subtle differences, for example, higher thyroglobulin recognition. Such differences reflect influence of the constant region on the antigen-binding site configuration. Unlike, variable light domain FdV L 1H12, the variable heavy domain FdV H 1H12 alone recognized multiple antigens that differed from the recognition pattern of scFv1H12 (FdV H +FdV L ) and the parent IgM antibody. Nonetheless, role of FdV L 1H12 in providing structural support to FdV H in antigen recognition is noted, apart from its intrinsic antigen recognition ability. Surface plasmon resonance analysis revealed low to moderate affinity of scFv1H12 to IgG antigen. By contrast, the individual FdV H 073 and FdV L 074, originating from induced BoHV-1 neutralizing IgG1 antibody, recognized target epitope on BoHV-1 weakly when compared to FdV H +FdV L (scFv3-18L). Interestingly, both the FdV H and FdV L domains of induced IgG antibody are required to achieve BoHV-1 neutralization. To conclude, there exist subtle functional differences in the contribution of FdV H and FdV L to antigen-binding site generation of polyspecific IgM and monospecific IgG antibodies relevant to antigen recognition and virus neutralization functions.