The index of biotic integrity (IBI) integrates 12 measures of stream fish assemblages for assessing water resource quality. Initially developed and tested in the Midwest, the IBI recently was adapted for use in western Oregon, northeastern Colorado, New England, the Appalachians of West Virginia and Virginia, and northern California. The concept also was extended to Louisiana estuaries. In regions of low species richness, the IBI proved difficult to apply and often required extensive modification. Adapting the 1BI to those regions required that metrics be replaced, deleted, or added to accommodate regional differences in fish distribution and assemblage structure and function. Frequently replaced metrics include: proportion of individuals as green sunfish (Lepomis cyanellus), proportion of individuals as insectivorous cyprinids, proportion of individuals as hybrids, and number and identity of sunfish and darter species. The proportion of individuals as top carnivore metric was often deleted. Metrics added include total fish biomass and the number and identity of minnow species. These modifications generally followed the original IBI concept and its theoretical underpinnings. Problems remain in establishing tolerance rankings and scoring criteria, and adjusting scoring criteria for gradient differences in streams of similar size. The IBI holds promise for direct biological monitoring because of its strong ecological foundation and flexibility. Vermont, Tennessee Valley Authority, Ohio, Kentucky, and Illinois have incorporated the IBI into their monitoring or standards programs. The IBI thus serves as a quantitative, biological goal for water resource management.
The conclusions of numerous stream restoration assessments all around the world are extremely clear and convergent: there has been insufficient appropriate monitoring to improve general knowledge and expertise. In the specialized field of instream flow alterations, we consider that there are several opportunities comparable to full-size experiments. Hundreds of water management decisions related to instream flow releases have been made by government agencies, native peoples, and non-governmental organizations around the world. These decisions are based on different methods and assumptions and many flow regimes have been adopted by formal or informal rules and regulations. Although, there have been significant advances in analytical capabilities, there has been very little validation monitoring of actual outcomes or research related to the response of aquatic dependent species to new flow regimes. In order to be able to detect these kinds of responses and to better guide decision, a general design template is proposed. The main steps of this template are described and discussed, in terms of objectives, hypotheses, variables, time scale, data management, and information, in the spirit of adaptive management. The adoption of such a framework is not always easy, due to differing interests of actors for the results, regarding the duration of monitoring, nature of funding and differential timetables between facilities managers and technicians. Nevertheless, implementation of such a framework could help researchers and practitioners to coordinate and federate their efforts to improve the general knowledge of the links between the habitat dynamics and biological aquatic responses.
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