2019
DOI: 10.1002/hep.30805
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Tumor‐Specific Transcripts Are Frequently Expressed in Hepatocellular Carcinoma With Clinical Implication and Potential Function

Abstract: Hepatocellular carcinoma (HCC) is a highly lethal cancer and its underlying etiology remains understudied. The immense diversity and complexity of the cancer transcriptome hold the potential to yield tumor‐specific transcripts (TSTs). Here, we showed that hundreds of TSTs are frequently expressed in HCC by an assembling spliced junction analysis of RNA sequencing raw data from approximately 1,000 normal and HCC tissues. Many of the TSTs were found to be unannotated and noncoding RNAs. We observed that intergen… Show more

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Cited by 18 publications
(15 citation statements)
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“…The aberrantly expressed lncRNAs, which act as diagnostic markers, prognostic indicators or predictors of therapeutic response, have been reported in various types of cancer including HCC 23 , 24 . For instance, the identification of tumor-specific transcripts (TSTs), which contain many noncoding RNAs and are detectable in extracellular vesicles from HCC patients' blood, may provide new insights into the development of HCC diagnosis 25 . Our previous studies have identified MCM3AP-AS1 and A1BG-AS1 as potential biomarkers for predicting the prognosis of HCC 7 , 11 .…”
Section: Discussionmentioning
confidence: 99%
“…The aberrantly expressed lncRNAs, which act as diagnostic markers, prognostic indicators or predictors of therapeutic response, have been reported in various types of cancer including HCC 23 , 24 . For instance, the identification of tumor-specific transcripts (TSTs), which contain many noncoding RNAs and are detectable in extracellular vesicles from HCC patients' blood, may provide new insights into the development of HCC diagnosis 25 . Our previous studies have identified MCM3AP-AS1 and A1BG-AS1 as potential biomarkers for predicting the prognosis of HCC 7 , 11 .…”
Section: Discussionmentioning
confidence: 99%
“…Next, we explore the potential molecular mechanism of up-regulated expression of MAPK4 in ALI. DNA methylation is commonly invoked as a mechanism for transcriptional repression [ 26 – 28 ], we wondered whether DNA demethylation of CpG island in MAPK4 promoter is contributed to the elevated expression of MAPK4 in ALI. Bioinformatics analysis indicated that there was a CpG island in the promoter of MAPK4 (Additional file 1 : Fig.…”
Section: Resultsmentioning
confidence: 99%
“…Next, we explore the potential molecular mechanism of up-regulated expression of MAPK4 in ALI. DNA methylation is commonly invoked as a mechanism for transcriptional repression [26][27][28], we wondered whether DNA demethylation of CpG island in MAPK4 promoter is contributed to the elevated expression of MAPK4 in ALI. Bioinformatics analysis indicated that there was a CpG island in the promoter of MAPK4 ( Supplementary Fig.…”
Section: Nfkb1 and Nr3c1 Negatively Regulate The Expression Of Mapk4 mentioning
confidence: 99%