Abstract. In the present study, the key genes and biological functions associated with insulin resistance were investigated by comparing the gene expression profiles of adipose tissue obtained from insulin-sensitive and insulin-resistant patients. The gene expression data set GSE20950 was downloaded from the Gene Expression Omnibus, including 39 adipose tissue samples obtained from insulin-sensitive and insulin-resistant patients undergoing gastric bypass surgery. Adipose samples were divided into two groups (the insulin-sensitive and insulin-resistant groups) and the differentially expressed genes (DEGs) were screened out with packages of R. The interactions among DEGs were retrieved with Osprey and functional enrichment analysis was performed with the WebGestalt system. Information regarding the interaction network and enriched biological functions was combined to construct a functional interaction network. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis was then conducted using the Database for Annotation, Visualization and Integrated Discovery. A total of 170 DEGs were detected in the insulin-sensitive group, 8 downregulated and 162 upregulated. Response to glucose stimulus was the most significantly over-represented functional term. The focal adhesion pathway was identified to be significant in the genes of the functional interaction network. The present study revealed key biological functions and DEGs in adipose tissues associated with insulin resistance, which may facilitate the development of novel therapies for insulin resistance and diabetes.
IntroductionDiabetes is caused by an absolute or relative deficiency of insulin. It is one of the most prevalent of all chronic diseases, which is characterized by high blood sugar and multiple secondary complications. Obesity is a risk factor for insulin resistance, a precursor of type 2 diabetes, which involves a decreased response to insulin signaling in several peripheral tissues including adipose, liver and muscle (1,2). However, not all obese individuals are insulin-resistant (3).Adipose tissue secretes numerous hormones and cytokines that function to regulate food intake and nutrient homeostasis, including insulin-like growth factor 2, leptin and resistin (4), and its role in the regulation of metabolism has been increasingly recognized in recent years (5). Previous studies have revealed a number of linkages between obesity and insulin resistance. Obesity-associated chronic inflammation in adipose tissue has a crucial role in the development of obesity-related insulin resistance (6-9). Adipocyte-derived cytokines are important in the pathogenesis of insulin resistance and type 2 diabetes (10). Hirosumi et al (11) indicated that the c-Jun amino-terminal kinase is a crucial mediator of obesity and insulin resistance. However, the molecular mechanisms underlying this effect remain elusive.In the present study, the gene expression profiles of adipose tissue samples obtained from insulin-sensitive and insulin-resistant patients were compared with...