Transcriptional analysis of olive flounder lectins in response to VHSV infection

Lee, Young Mee; Noh, Jae Koo; Kim, Hyun-Chul; Park, Choul Ji; Park, Jong Won; Noh, Gyeong Eon; Kim, Woo Jin; Kim, Kyung Kil

doi:10.7847/jfp.2016.29.1.013

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Journal of fish pathology

2016

DOI: 10.7847/jfp.2016.29.1.013

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Transcriptional analysis of olive flounder lectins in response to VHSV infection

Young Mee Lee¹,

Jae Koo Noh²,

Hyun-Chul Kim³

et al.

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2018

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“…In particular, characterizing of immune-related genes was reported in olive flounder spleen tissue 31 . A lot of studies reported earlier were focused on gene expression analysis of single pathogen and specifically defined the expression pattern of limited genes [32][33][34][35][36] . Further, infection by two or more pathogens were reported in the olive flounder genome 37,38 .…”

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Gene expression profiles alteration after infection of virus, bacteria, and parasite in the Olive flounder (Paralichthys olivaceus)

Nam

Mishra

Gim³

et al. 2018

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Olive flounder (Paralichthys olivaceus) is one of economically valuable fish species in the East Asia. In comparison with its economic importance, available genomic information of the olive flounder is very limited. The mass mortality caused by variety of pathogens (virus, bacteria and parasites) is main problem in aquaculture industry, including in olive flounder culture. In this study, we carried out transcriptome analysis using the olive flounder gill tissues after infection of three types of pathogens (Virus; Viral hemorrhagic septicemia virus, Bacteria; Streptococcus parauberis, and Parasite; Miamiensis avidus), respectively. As a result, we identified total 12,415 differentially expressed genes (DEG) from viral infection, 1,754 from bacterial infection, and 795 from parasite infection, respectively. To investigate the effects of pathogenic infection on immune response, we analyzed Gene ontology (GO) enrichment analysis with DEGs and sorted immune-related GO terms per three pathogen groups. Especially, we verified various GO terms, and genes in these terms showed down-regulated expression pattern. In addition, we identified 67 common genes (10 up-regulated and 57 down-regulated) present in three pathogen infection groups. Our goals are to provide plenty of genomic knowledge about olive flounder transcripts for further research and report genes, which were changed in their expression after specific pathogen infection.

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mentioning

confidence: 99%

Gene expression profiles alteration after infection of virus, bacteria, and parasite in the Olive flounder (Paralichthys olivaceus)

Nam

Mishra

Gim³

et al. 2018

Sci Rep

Self Cite

View full text Add to dashboard Cite

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Transcriptional analysis of olive flounder lectins in response to VHSV infection

Cited by 1 publication

References 39 publications

Gene expression profiles alteration after infection of virus, bacteria, and parasite in the Olive flounder (Paralichthys olivaceus)

Gene expression profiles alteration after infection of virus, bacteria, and parasite in the Olive flounder (Paralichthys olivaceus)

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