In this paper, short time Fourier transform techniques are used to analyze the mode content of overmoded waveguides. The analysis is applied to transmission through straight sections, bends, and T-junctions. In addition to determining the modes with the dominant contributions to the response, the presence of mode conversion in bends and T-junctions is observed. The direct application of this technique is channel characterization of an HVAC duct system, which behaves as a multimode waveguide network at RF frequencies when used for indoor wireless communications.