Using the method of chromosomal walking, wt have isolated a contiguous region of the Drosophila melanogaster X chromosome which corresponds to salivary gland chromosome bands 3C12 to 3D4. This five-band region contains approximately 100 kilobases of DNA, including those sequences comprising dunce, a gene which functions in memory and cyclic nucleotide metabolism. Genome blots of DNA from flies carrying several different chromosomal aberrations with breakpoints in the region have been probed with the isolated clones to map the breakpoints on the cloned DNA and to delimit dunce sequences. This has localized dunce to a 50-kilobase region. In addition, we have searched this 50-kilobase region for restriction site polymorphisms between X chromosomes from different Drosophila strains by genome blotting experiments, and we have followed the segregation of detected polymorphisms and dunce alleles after meiotic recombination. The data map one dunce mutation between two polymorphisms located 10 to 12 kilobases apart.The dunce (dnc) gene of Drosophila melanogaster is of special interest because it plays a role in cyclic nucleotide metabolism and a variety of behavioral processes. The dnc mutant flies execute poorly several different associative learning tasks, including those employing olfactory (9) and visual (11) cues, with positive (31) or negative (9) reinforcement. The associative learning deficit is manifest not only in flies but also in dnc mutant larvae (1). Operant conditioning is altered by lesions in this gene (3), as are the nonassociative learning responses of habituation and sensitization (10). In addition, dnc mutations disrupt one aspect of normal courtship behavior (13). Although normal learning by dnc mutants is not detected in some situations (11), the mutants learn normally but forget rapidly in others (8,10,31). Consequently, dnc flies are best classed as memory mutants.The observation that the dnc mutation perturbs normal cyclic AMP metabolism (4) led to the suggestion that cyclic AMP is intimately involved in behavioral plasticity, a conclusion also reached frotn studies of learning and memory by Aplysia (15). More specifically, one of three normal forms of cyclic nucleotide phosphodiesterase expressed in normal Drosophila adults (6, 16; R. L. Davis and L. M. Kauvar, Adv. Cyclic Nucleotide Res., in press) is deficient in dnc mutants (4, 7). The current evidence suggests that dnc is the structural gene for this form of cyclic AMP phosphodiesterase (Davis and Kauvar, in press). Cyclic AMP levels are elevated in dnc mutants (4, 7), apparently due to the loss in one of the degradative enzymes.We describe here the isolation of the chromosomal region which contains dnc+, and also our experiments to map the gene on cloned DNA as the first step to probe the structure, regulation, evolution, and biological function of the gene.Chromosomal walking has been employed to isolate the dnc+ chromosomal region, and principles of recombinational mapping advanced by Sturtevant (30) Genome DNA was isolated from adult ...