The soybean ubiquitin‐proteasome system: Current knowledge and future perspective

Xiong, Erhui; Qu, Xuelian; Li, Junfeng; Liu, Hongli; Ma, Hui; Zhang, Dan; Chu, Shanshan; Jiao, Yongqing

doi:10.1002/tpg2.20281

Cited by 4 publications

(6 citation statements)

References 141 publications

(174 reference statements)

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“…Seed size and weight are closely related to oil content in soybean [ 11 , 29 ]. Multiple signalling pathways are involved in the regulation of seed size, including photosynthesis, carbon metabolism, histone methylation, hormone signalling pathway, ubiquitin protease pathway and MKKK pathway [ 3 , 27 , 39 , 40 ]. These pathways regulate seed size by controlling embryo and endosperm development and the proliferation and growth of seed coat or hull cells.…”

Section: Discussionmentioning

confidence: 99%

“…Merr.) is one of the most economically important protein and oil seed crops [ 1 – 3 ]. At present, the main goal of soybean breeding is to increase soybean oil content and yield.…”

Section: Introductionmentioning

confidence: 99%

“…Seed size and weight are closely related to oil content in soybean [ 12 ]. Several genes that regulate seed size have also been identified in soybean [ 3 , 13 , 14 ], including GmST05 [ 15 ], GmGA20OX [ 11 ], GmPP2C-1 [ 16 ], GmBS1 and GmBS2 [ 17 ], GmCYP78A10 and GmCYP78A72 [ 18 , 19 ], GmCIF1 [ 20 ], GmWRKY15a [ 21 ], GmDREBL [ 9 ] and GmPIP2;9 [ 22 ]. For example, GmST05 , encodes a member of the PEBP family, identified in soybean using a genome-wide association study (GWAS) of over 1800 soybean accessions.…”

Section: Introductionmentioning

confidence: 99%

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WGCNA and transcriptome profiling reveal hub genes for key development stage seed size/oil content between wild and cultivated soybean

Yao,

Xiong,

et al. 2023

BMC Genomics

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Background Soybean is one of the most important oil crops in the world. The domestication of wild soybean has resulted in significant changes in the seed oil content and seed size of cultivated soybeans. To better understand the molecular mechanisms of seed formation and oil content accumulation, WDD01514 (E1), ZYD00463 (E2), and two extreme progenies (E23 and E171) derived from RILs were used for weighted gene coexpression network analysis (WGCNA) combined with transcriptome analysis. Results In this study, both seed weight and oil content in E1 and E171 were significantly higher than those in E2 and E23, and 20 DAF and 30 DAF may be key stages of soybean seed oil content accumulation and weight increase. Pathways such as “Photosynthesis”, “Carbon metabolism”, and “Fatty acid metabolism”, were involved in oil content accumulation and grain formation between wild and cultivated soybeans at 20 and 30 DAF according to RNA-seq analysis. A total of 121 oil content accumulation and 189 seed formation candidate genes were screened from differentially expressed genes. WGCNA identified six modules related to seed oil content and seed weight, and 76 candidate genes were screened from modules and network. Among them, 16 genes were used for qRT-PCR and tissue specific expression pattern analysis, and their expression-levels in 33-wild and 23-cultivated soybean varieties were subjected to correlation analysis; some key genes were verified as likely to be involved in oil content accumulation and grain formation. Conclusions Overall, these results contribute to an understanding of seed lipid metabolism and seed size during seed development, and identify potential functional genes for improving soybean yield and seed oil quantity.

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Section: Discussionmentioning

confidence: 99%

“…Merr.) is one of the most economically important protein and oil seed crops [ 1 – 3 ]. At present, the main goal of soybean breeding is to increase soybean oil content and yield.…”

Section: Introductionmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

See 1 more Smart Citation

WGCNA and transcriptome profiling reveal hub genes for key development stage seed size/oil content between wild and cultivated soybean

Yao,

Xiong,

et al. 2023

BMC Genomics

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“…Various studies have shown that ubiquitination plays a key role in stress response and yield constitution [ 87 ]. In the UniProtKB database, 2429 ubiquitin-related proteins are predicted in soybean [ 85 ]. Ubiquitin plays a key role in regulating the resistance of soybean to Heterodera glycines , a soybean cyst nematode causal agent [ 84 ]; P. sojae , an infection that causes stem and root rot [ 86 ]; and heat shock [ 87 ].…”

Section: Discussionmentioning

confidence: 99%

Genome-Wide Association Analysis for Resistance to Coniothyrium glycines Causing Red Leaf Blotch Disease in Soybean

Lukanda,

Dramadri,

Adjei

et al. 2023

Genes

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Soybean is a high oil and protein-rich legume with several production constraints. Globally, several fungi, viruses, nematodes, and bacteria cause significant yield losses in soybean. Coniothyrium glycines (CG), the causal pathogen for red leaf blotch disease, is the least researched and causes severe damage to soybean. The identification of resistant soybean genotypes and mapping of genomic regions associated with resistance to CG is critical for developing improved cultivars for sustainable soybean production. This study used single nucleotide polymorphism (SNP) markers generated from a Diversity Arrays Technology (DArT) platform to conduct a genome-wide association (GWAS) analysis of resistance to CG using 279 soybean genotypes grown in three environments. A total of 6395 SNPs was used to perform the GWAS applying a multilocus model Fixed and random model Circulating Probability Unification (FarmCPU) with correction of the population structure and a statistical test p-value threshold of 5%. A total of 19 significant marker–trait associations for resistance to CG were identified on chromosomes 1, 5, 6, 9, 10, 12, 13, 15, 16, 17, 19, and 20. Approximately 113 putative genes associated with significant markers for resistance to red leaf blotch disease were identified across soybean genome. Positional candidate genes associated with significant SNP loci-encoding proteins involved in plant defense responses and that could be associated with soybean defenses against CG infection were identified. The results of this study provide valuable insight for further dissection of the genetic architecture of resistance to CG in soybean. They also highlight SNP variants and genes useful for genomics-informed selection decisions in the breeding process for improving resistance traits in soybean.

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“…The global population is projected to reach 9 billion by 2050; with its continuous growth, it is important to consider how we can achieve food security [1]. Consequently, increasing crop yield has become a global scientific concern [2,3]. Soybean (Glycine max (L.) Merr.)…”

Section: Introductionmentioning

confidence: 99%

The Effect of Different Thiamethoxam Concentrations on Riptortus pedestris Development and Fecundity

Wang,

et al. 2024

Toxics

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The stink bug, Riptortus pedestris (Fabricius) (Hemiptera: Alydidae), is a highly destructive pest that significantly damages legume crops in East and South Asia. Neonicotinoid insecticides containing thiamethoxam are widely used to control R. pedestris in soybean fields. However, the current knowledge on the impact of different thiamethoxam concentrations on R. pedestris growth and reproduction is lacking and insufficient. The present study investigated the effects of thiamethoxam on the biological traits of R. pedestris after treatment with LC10 (19.8 mg/L), LC20 (31.6 mg/L), LC30 (44.2 mg/L), LC40 (58.9 mg/L), and LC50 (77.0 mg/L) concentrations. These five thiamethoxam concentrations (LC10~LC50) reduced adult longevity and fecundity in the F1 generation females. Thiamethoxam treatment also significantly decreased the population trend index, intrinsic rate of increase, net reproductive rate, gross reproductive rate, and finite rate of increase and increased the mean generation time. These results show that thiamethoxam hinders and suppresses the development and growth of the F1 population of R. pedestris. Thiamethoxam is recommended for spray control during peak adult emergence, as it not only has a controlling effect on the parental generation but also a negative impact on the F1 generations.

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The soybean ubiquitin‐proteasome system: Current knowledge and future perspective

Cited by 4 publications

References 141 publications

WGCNA and transcriptome profiling reveal hub genes for key development stage seed size/oil content between wild and cultivated soybean

WGCNA and transcriptome profiling reveal hub genes for key development stage seed size/oil content between wild and cultivated soybean

Genome-Wide Association Analysis for Resistance to Coniothyrium glycines Causing Red Leaf Blotch Disease in Soybean

The Effect of Different Thiamethoxam Concentrations on Riptortus pedestris Development and Fecundity

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